BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931764

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35370.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   429    1e-119


> AT4G35370.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:16815138-16817544 FORWARD LENGTH=1342
Length=1342

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 323/365 (88%), Gaps = 13/365 (4%)
 Strand=Plus/Plus

Query  47    GAGTCTTAAAGATGGAACTGTGAAGAGCTTTGATATACGTGCTGCTGATTTATCACCAAG  106
             |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct  960   GAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGTGCTTCTGATTTATCACCAAG  1019

Query  107   TTTTACTCTCCATGCTAATGATGGTGAAGTCTCCTCCATTTCATACAACATACATGCCCC  166
             ||| | | |||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  1020  TTTCATTATCCATGCTCATGATAGTGAAGTCTCCTCCATATCATACAACATACATGCCCC  1079

Query  167   CAATCTTTTGGCTATGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA  226
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1080  CAATCTTTTGGCTACGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA  1139

Query  227   TCAACCATCATGGATTGCTACGCACTTGCCAAATGCTGTAAGAGGAATAGTTTTCTCGGT  286
              ||||||||||||||||||||  ||  |||||||||||   ||| ||  |||||||||||
Sbjct  1140  CCAACCATCATGGATTGCTACAAACAAGCCAAATGCTG---GAG-AA--GTTTTCTCGGT  1193

Query  287   CTCATTCTCCGCGGACTGCCCTTTCTTACTCGCTGCTGGTAGCTCAGAGGGG--AAGCTA  344
             ||||||||| ||||||||||| ||||||||||||| |||| |||||||||||  ||  | 
Sbjct  1194  CTCATTCTCAGCGGACTGCCCCTTCTTACTCGCTGTTGGTGGCTCAGAGGGGCTAAA-TG  1252

Query  345   AAAGTGTGGGATACACTG-TCGGACAACGG-TGTGTCCCGAAGATATGGAAGCAACCGAC  402
              ||||||||||||| ||  || |||| | | |||||||||||||||||| |||| |||||
Sbjct  1253  TAAGTGTGGGATAC-CTTATCAGACA-CTGCTGTGTCCCGAAGATATGGTAGCAGCCGAC  1310

Query  403   CGTGA  407
             | |||
Sbjct  1311  CATGA  1315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20257902847


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5