BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931764 Length=427 Score E Sequences producing significant alignments: (Bits) Value AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfami... 429 1e-119 > AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16815138-16817544 FORWARD LENGTH=1342 Length=1342 Score = 429 bits (232), Expect = 1e-119 Identities = 323/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 47 GAGTCTTAAAGATGGAACTGTGAAGAGCTTTGATATACGTGCTGCTGATTTATCACCAAG 106 |||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||||| Sbjct 960 GAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGTGCTTCTGATTTATCACCAAG 1019 Query 107 TTTTACTCTCCATGCTAATGATGGTGAAGTCTCCTCCATTTCATACAACATACATGCCCC 166 ||| | | |||||||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1020 TTTCATTATCCATGCTCATGATAGTGAAGTCTCCTCCATATCATACAACATACATGCCCC 1079 Query 167 CAATCTTTTGGCTATGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA 226 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CAATCTTTTGGCTACGGGATCTGCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAA 1139 Query 227 TCAACCATCATGGATTGCTACGCACTTGCCAAATGCTGTAAGAGGAATAGTTTTCTCGGT 286 |||||||||||||||||||| || ||||||||||| ||| || ||||||||||| Sbjct 1140 CCAACCATCATGGATTGCTACAAACAAGCCAAATGCTG---GAG-AA--GTTTTCTCGGT 1193 Query 287 CTCATTCTCCGCGGACTGCCCTTTCTTACTCGCTGCTGGTAGCTCAGAGGGG--AAGCTA 344 ||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| || | Sbjct 1194 CTCATTCTCAGCGGACTGCCCCTTCTTACTCGCTGTTGGTGGCTCAGAGGGGCTAAA-TG 1252 Query 345 AAAGTGTGGGATACACTG-TCGGACAACGG-TGTGTCCCGAAGATATGGAAGCAACCGAC 402 ||||||||||||| || || |||| | | |||||||||||||||||| |||| ||||| Sbjct 1253 TAAGTGTGGGATAC-CTTATCAGACA-CTGCTGTGTCCCGAAGATATGGTAGCAGCCGAC 1310 Query 403 CGTGA 407 | ||| Sbjct 1311 CATGA 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20257902847 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5