BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931766
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate syn... 1391 0.0
AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate syn... 313 3e-84
> AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate synthase
4 | chr2:8083740-8084888 REVERSE LENGTH=1149
Length=1149
Score = 1391 bits (753), Expect = 0.0
Identities = 1007/1127 (89%), Gaps = 27/1127 (2%)
Strand=Plus/Plus
Query 133 CTCAAACCATTTTTCTGTATCTTGTAATCGTTTTTCTATCTCTACACTTCGTGTTTGCAA 192
|||||| || ||||| |||||| | ||||| |||||||||||||||||||||||| |||
Sbjct 24 CTCAAAATATCTTTCTCTATCTTTTGATCGTCTTTCTATCTCTACACTTCGTGTTTACAA 83
Query 193 CTCTTAAACAACGACTAAGTCCCGCGATTACGCGGCGGCTTATCCGTCTCCTCC--ACCG 250
|||| ||| ||| || |||||||||| ||| |||||||||||||| || |||| | |
Sbjct 84 CTCTGAAAGGACGGCTGAGTCCCGCGAATACACGGCGGCTTATCCGCCTTCTCCATATC- 142
Query 251 CCGTAACAAATTTCCGG-CAGCCGCCT-CTGTTTTC-CTCCGAAAAGACGCCCGTGAGTT 307
||| | ||||| ||||| | |||| || || ||||| || |||||||| ||||||||||
Sbjct 143 CCG-ATCAAATCTCCGGTC-GCCG-CTGCTATTTTCGCT-AGAAAAGACACCCGTGAGTT 198
Query 308 TCTTGATTCATCAACCCAAA-TAGAAAACAAAGAAGACGA------TTTC-G----G-TT 354
|||||||||||||| |||| ||| |||| |||||||||| |||| | | ||
Sbjct 199 TCTTGATTCATCAA-TCAAATTAGTAAACGAAGAAGACGATTTCGGTTTCAGTTTCGATT 257
Query 355 TCAAACCGTACATGATCAGGAAAGCAGAGACAATAAACAGAGCACTAGACAAAGCCATTC 414
||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||
Sbjct 258 TCAAACCGTACATGATCAGCAAAGCAGAGACAATAAACAGAGCATTAGATGAAGCAATTC 317
Query 415 CACTCATTGAGCCTCTCAACATCTACAAGGCAATGCGTTACACGATTTTCGCAGGCGGAA 474
|||| |||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 318 CACTTATTGAGCCACTCAACATCCACAAGGCAATGCGTTACGCGATTCTCGCAGGCGGAA 377
Query 475 AACGCGTTAGGCCAATACTCTGCCTCGCCGCTTGCGAGCTAGTGGGCGGGGGAGAGCGTT 534
|||| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 378 AACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCGGCGGGGAAGAGCGTT 437
Query 535 CAGCGATTCCAGCGGCTTTTTCGGTTGAAATGATTCATACAATGTCACTAATCAAAGACG 594
|||||||| |||||||| | | |||||||||||||| ||||||||||| ||||||||||
Sbjct 438 TAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGTCACTCATCAAAGACG 497
Query 595 ATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGTAAACCAACAACACACAAAGTAT 654
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 498 ATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAACAACACATAAAGTCT 557
Query 655 TCGGAGAAAGTGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTCTAGCTTTCGAGCATT 714
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAGCTCTAGCTTTCGAGCATT 617
Query 715 TGACGGAAGCTGACGTGTCTTCCAAGAAAATGGTTCGAGTCGTTAAAGAATTGGCTAAGT 774
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 618 TGACGGAAGCTGACGTGTCATCCAAGAAAATGGTTCGAGCCGTTAAAGAATTGGCTAAGT 677
Query 775 CTATTGGAACAAAAGGACTTGTGGCGGGACAAGCGATGGATTTAAGCAGTGAAGGGCTGG 834
|||||||||| |||||||| || |||||||| |||| ||||||||||||||||||| |||
Sbjct 678 CTATTGGAACGAAAGGACTCGTAGCGGGACAGGCGAAGGATTTAAGCAGTGAAGGGTTGG 737
Query 835 ATCCAAACGACT-TCAGATTAGAGGATCTTGAATATATTCACGTTCATAAAACAGGTGCG 893
| | |||||| | || ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 738 AACAAAACGA-TGTCGGATTAGAGGATCTTGAATATATTCACGTTCATAAAACCGGTTCG 796
Query 894 TTGCTTGAAGCATCAGCGGTTATCGGAGCGGTTATTGGCGGTGGATCAGAGGAAGAGATA 953
|||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 797 TTGCTTGAAGCATCTGCGGTTATCGGAGCGGTTATAGGCGGTGGAACAGAGAAAGAGATA 856
Query 954 GAGAAGGTGAGAAGCTTTGCGAGGTGTATTGGATTGTTGTTTCAGGTGGTTGATGATATC 1013
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 857 GAGAAAGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGGTGGTTGATGATATC 916
Query 1014 TTGGATGAGACCAAGTCCTCGGAGGAATTGGGAAAAACCGCCGGAAAAGATAAGGTCGCC 1073
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAAAAGATAAGGTCGCC 976
Query 1074 GGAAAGCTAACGTATCCGAGAGTGATTGGTCTTGAGAAATCTAAGGAGTTTGTGAAAAAG 1133
|||||||| |||||||| | |||||||||| ||||||||||||||||||||||| | |||
Sbjct 977 GGAAAGCTGACGTATCCAAAAGTGATTGGTGTTGAGAAATCTAAGGAGTTTGTGGAGAAG 1036
Query 1134 TTGAATAGAGAAGCTAAAGAACATATTCAAGGGTTTGATGAGGACAAAGTGAAACCTTTG 1193
||||| ||||| || | ||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1037 TTGAAGAGAGATGCGAGAGAACATCTTCAAGGGTTTGATTCTGACAAAGTCAAACCTTTG 1096
Query 1194 ATTGCTCTTACTAACTTCATTGCCAACAGAAACAACTGAAGAT-GTT 1239
|| |||||||||||||||||||||||||||||| |||||| || |||
Sbjct 1097 ATAGCTCTTACTAACTTCATTGCCAACAGAAACCACTGAAAATTGTT 1143
> AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase
1 | chr4:17343374-17344865 FORWARD LENGTH=1492
Length=1492
Score = 313 bits (169), Expect = 3e-84
Identities = 622/835 (74%), Gaps = 54/835 (6%)
Strand=Plus/Plus
Query 347 TTTCGGTTTCAAACCGTACATGATCAGGAAAGCAGAGA-CAATAAACAGAGCACTAGACA 405
||||| ||||| ||||||| |||| ||||| || | | | |||| ||| ||||
Sbjct 358 TTTCGATTTCATGTCGTACATCATCACCAAAGCCGA-ATTAGTCAACAAAGCTTTAGATT 416
Query 406 AAGCCATTCCACTCATTGAGCCTCTCAACATCTAC-AAGGCAATGCGTTACACGATTTTC 464
||| |||| ||| |||||| ||||| ||| || || || ||||||||| | || ||
Sbjct 417 CAGCTGTTCCTCTCCGTGAGCCACTCAAGATCCACGAA-GCGATGCGTTACTCTCTTCTC 475
Query 465 GCAGGCGG-AAAACGCGTTAGGCCAATACTCTGCCTCGCCGCTTGCGAGCTAGTGGGCGG 523
|| || || |||| | ||||| ||| | |||||| |||| ||||| || || || || ||
Sbjct 476 GCCGGTGGCAAAA-GAGTTAGACCAGTTCTCTGCATCGCTGCTTGTGAACTCGTCGGAGG 534
Query 524 GGGAG-AGCGTTCAGCGATTCCAGCGGCTTTTTCGGTTGAAATGATTCATACAATGTCAC 582
| || | | | || || ||||| |||| | || || |||||||| || |||||
Sbjct 535 TGAAGAATC-AACCGCTATGCCAGCAGCTTGCGCCGTCGAGATGATTCACACCATGTCGT 593
Query 583 TAATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGTAAACC-AACA 641
| ||| | |||||||| ||||||||||| |||||||||||||| || || ||||| | ||
Sbjct 594 TGATCCACGACGATCTCCCTTGTATGGATAACGACGATCTCCGCCGTGGAAAACCGACCA 653
Query 642 ACACACAAAGTATTCGGAGAAAG-TGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTCT 700
|| |||||||| || || | ||| || ||| || | |||| | ||| ||| | || |
Sbjct 654 AC-CACAAAGTGTTTGGTG-AAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTT 711
Query 701 AGCTTTCGAGCATTT-G--AC-G-GA--AG--CTGACG-TGTCT-TCC-AAGAAAATGGT 748
|||||||||||||| | | | || || |||| | ||| | ||| || | ||||
Sbjct 712 CGCTTTCGAGCATTTAGCTTCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGT 771
Query 749 TCGAGTCGTTAAAGAATTGGCT-AAGTCTATTGGAACAAAAGGACTT-GTGGCGGGACAA 806
||||| |||| |||||||||| ||| | || |||||| |||| || |||||||| |||
Sbjct 772 TCGAGCCGTTGGAGAATTGGCTAAAG-CGATAGGAACAGAAGG-GTTAGTGGCGGGTCAA 829
Query 807 G-CGATGGAT-TTAAGCAGTGAAGGGCTGGATCCAAACGACTTCAGATTAGAGGATCTT- 863
| || ||||| || || ||||||||| | ||| ||||||| || | |||||| || ||
Sbjct 830 GTCG-TGGATATT-AGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCAT-TTG 886
Query 864 GAATATATTCACGTT-CATAAAACAGG-TGCGTTGCTTGAAGCATCAGCGGTTATCGGAG 921
|| | ||| || || |||||||| || |||||||||||||| || || ||| | ||||
Sbjct 887 GAGTTTATCCA-TTTGCATAAAAC-GGCGGCGTTGCTTGAAGCTTCTGCTGTTTTGGGAG 944
Query 922 CGGTTATTGGCGGTGGATCAGAGGAAGAGATAGAGAAGG-TGAG-AAGCTTTGCGAGGTG 979
| || |||| || ||| || || ||||| ||| ||| | || ||| |||||||| ||
Sbjct 945 CTATTGTTGGTGGAGGAAGTGATGATGAGATTGAG-AGGTTAAGAAAG-TTTGCGAGATG 1002
Query 980 TATTGGATTGTTGTTTCAGGTGGTTGATGATATCTTGGATGAGACCAAGTCCTCGGAGGA 1039
|||||| |||||||||||||||||||||||||||||||||| ||| || || ||| | ||
Sbjct 1003 TATTGGTTTGTTGTTTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGA 1062
Query 1040 ATT-GGGAAAAACCGCCGGAAAAGATAAGGTCGCCGGA-AAGCTAACGTATCCGA-GAGT 1096
|| ||||||| | || || |||||| | | || | | ||| | |||||||| | || |
Sbjct 1063 GTTAGGGAAAA-CTGCTGGGAAAGATTTGATTGCTG-ATAAGTTGACGTATCCTAAGATT 1120
Query 1097 GATTGGTCTTG-AGAAATCTA-AGGAGTTTG-TGAAAAAGTTGAATAGAGAAGCT 1148
|| ||| ||| ||||||| | || |||||| ||| ||| ||||||||||| |||
Sbjct 1121 -ATGGGT-TTGGAGAAATCGAGAG-AGTTTGCTGAGAAA-TTGAATAGAGAGGCT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5