BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931769

Length=587
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18670.1 | Symbols:  | RING/U-box superfamily protein | chr2...   859    0.0  


> AT2G18670.1 | Symbols:  | RING/U-box superfamily protein | chr2:8093220-8095729 
FORWARD LENGTH=2072
Length=2072

 Score =  859 bits (465),  Expect = 0.0
 Identities = 521/549 (95%), Gaps = 0/549 (0%)
 Strand=Plus/Plus

Query  18   CCGATGCCTCCGACCAATAATTACCGAATCTCCGGCGAGCCACCGTCTACTTCACCGTCT  77
            |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct  247  CCGATGCCTCCGACCAATAATTACCGAATCTCCGGCGAACCACCGTCTACTACGCCGTCT  306

Query  78   CCTCCACCGCCAAAGCCGAAAACAAGGATTCTCTCTGTATTCCTCGTCGGTTTAATCATG  137
            | |||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct  307  CATCCACCGCCAAAACCGAAAACAAGGATTCTCTCTCTATTCCTCGTTGGTGTAATCATG  366

Query  138  TTTTCAAtcttctttctcttccttgttcttatcggcatcgcctctgttcttattctccct  197
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct  367  TTTTCAATCTTCTTTCTCTTCCTCGTTCTTATCGGTATCGCCTCTGTTCTTATCCTCCCT  426

Query  198  ctcctcctctcttctctccATCGTCACCACCGACGTCGCCGTCGTAATCGTCGACAAGAA  257
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  427  CTCCTCCTCTCTTCTCTCCATCGTCACCACCGACGTCGTCGTCGTAATCGCCGACAAGAA  486

Query  258  TCCTCTGATGGGTTGTCTTCAAGATTCGTGAAAAAACTTCCCCAATTCAAATTCTCCGAA  317
            ||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  487  TCCTCAGATGGGTTATCTTCAAGATTCGTGAAAAAGCTTCCTCAATTCAAATTCTCCGAA  546

Query  318  CCCACCACATACACACGGTACGAGAGCGATTGCGTGGTTTGTTTTGATGGATTCAGACAA  377
            || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  547  CCTAGCACATACACACGGTACGAGAGCGATTGTGTGGTTTGTTTTGATGGATTCAGACAA  606

Query  378  GGACAATGGTGTCGGAATCTTCCTGGCTGTGGACACGTGTTTCATCGGAAGTGTGTTGAC  437
            |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct  607  GGACAATGGTGTCGGAATCTTCCTGGTTGTGGACACGTGTTTCATCGAAAGTGTGTGGAC  666

Query  438  ACTTGGTTGCTCAAATCCTCGACGTGTCCTATTTGCAGAGCTAGGGTTAGATTGAGGGAA  497
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  667  ACTTGGTTGCTCAAAGCCTCGACGTGTCCTATTTGCAGAGCTAGGGTTAGATTGTGGGAG  726

Query  498  GAAGATGCACATGAAGGAGAATTATGGAGATGTTTTGGTCATAGAAGAAGTAGTTTGCTA  557
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  727  GAAGATCCACAAGAAGGAGAATTATGGAGATGTTTTGGTCATAGAAGAAGTAGTTTGCTA  786

Query  558  GATTTGTAA  566
            |||||||||
Sbjct  787  GATTTGTAA  795



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28231590614


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5