BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931778

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synt...   111    3e-24


> AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synthetase 
1.3 | chr3:6097414-6099595 FORWARD LENGTH=1341
Length=1341

 Score =  111 bits (60),  Expect = 3e-24
 Identities = 80/90 (89%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  21   ACATGCAGGTTATGTGTGATCCTTATACACCAGCTGGTGTTCCAATTCCAACCAACAAGA  80
            |||| | ||| ||||||||| |||| ||||||||||||| ||| ||||||||||||||||
Sbjct  349  ACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGA  408

Query  81   GGCACAACGCTGCTAAAATTTTCAGACACC  110
            |||||||||||||||| || ||||| ||||
Sbjct  409  GGCACAACGCTGCTAAGATCTTCAGCCACC  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5