BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931789
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16190.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 817 0.0
> AT2G16190.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1);
Has 77 Blast hits to 77 proteins in 25 species:
Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants
- 56; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr2:7020493-7021601 REVERSE LENGTH=1109
Length=1109
Score = 817 bits (442), Expect = 0.0
Identities = 723/850 (85%), Gaps = 54/850 (6%)
Strand=Plus/Plus
Query 165 CAAGGGC-AGTTCATGCAACTCTTGATATCAGATTCTCCACAAAATATCCAACCCTCTCC 223
||| ||| || ||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 104 CAA-GGCGAGGTCATGCAACTCTTGACATCAGATCCTCCACAAAATACCCAACCCTCTCC 162
Query 224 TTCTCAACCACATCAGATGACACTTTTGGAAGACTTC-ACGGCCAACGGCACAAA-CACT 281
| ||||| | || | |||||| | |||||| |||||||| ||||| || |
Sbjct 163 TCCTCAA-C-CA--A-ATGACA----T----GACTTCTTTTGCCAACGGAACAAACCA-T 208
Query 282 TTGATTGTTCCCACGCA--ATC-T------GC---ACCTCCACTAAGCGTCTCAGCAGTG 329
|||||||||||||||| || | || ||| || | || ||||| ||||
Sbjct 209 GTGATTGTTCCCACGCAGGCTCTTGAGCAAGCTGTACCGCCCCCAAACGTCT---CAGT- 264
Query 330 GCGG-CCCCATGGCGTGATCAACCTTCAGAAAAACTCCCTCACCCTCCTGAAGTGAACCA 388
| || |||||| || | |||||||||||||| || ||| || ||||||| || |||||||
Sbjct 265 GAGGACCCCATTGCCTTATCAACCTTCAGAAGAAGTCCTTCCCCCTCCTCAACTGAACCA 324
Query 389 GGTTGCAACCGTGGCCTCGGAAACTCGCCGCAGAGGTCGTCCACCAGGAGGACAAGCACG 448
|||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 325 GGTTGCCACCGTGGCCTTGGCAACTCCCCGCAGAGGTCGTCCACCAGGAGGACAAGCACG 384
Query 449 TCGTATTTCAACAAGAGCGGCAGCTGCGGTTGATAGCAACGT-GGATAACAGGGAGATGT 507
||||| |||| |||| ||| |||| |||||| || ||||| || | ||||||||| |
Sbjct 385 TCGTAACTCAAAAAGACCGGTGGCTGGGGTTGAAAGAAACGTAGG-TGACAGGGAGA--T 441
Query 508 CGGAGATCATACCACCGTATCCATGGGCCACCAAAAAGCCAGGCGAAATCTAGTCCATCA 567
| | ||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 442 C---G----TACCACCGTATCCATGGGCCACCAAAAAGCCAGGCAAAATCCAGTCTTTCA 494
Query 568 GAGACTTGTCTTCCAAGAATTTAAACGTGATCTCTGGACTAGTCCACTGCAAAACTTGCG 627
|||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 495 GAGACTTGTCTTCCAACAATATAAACGTCATCTCTGGACAAGTCCACTGCAAAACTTGCG 554
Query 628 ATAAGACTTACA-AGTTGGACTATAATCT-GATGGAGAAATTTTCGGAATTGTATGAATA 685
||| ||| ||| ||| || |||||||| || ||||||||||||||||||||||| |||
Sbjct 555 ATAGGACCGACACGGTT-GAATATAATCTGGA-GGAGAAATTTTCGGAATTGTATGGATA 612
Query 686 CATTAAGGTGAACAAGGAGGTGATGCGTCAACGAGCCCCGGGTA-TATGGTCAACCCCGA 744
|||||||||||||||||||| |||||| || ||||||||||||| | |||||||||||||
Sbjct 613 CATTAAGGTGAACAAGGAGGAGATGCGCCATCGAGCCCCGGGTAGT-TGGTCAACCCCGA 671
Query 745 AACTGATACCGTG-CGGCACATGCAAGAGTGAGATGAAGCCTGTAATGTCTGAAAGGAAG 803
||||||| ||||| || |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 672 AACTGATTCCGTGTAGG-ACATGCAAGAGTGAGATGAAGCCTGTGATGTCCGAGAGGAAG 730
Query 804 GAAGAAATTAACTGGTTGTTTCTTCTGTTAGGGCAGATGTTGGGATGTTGTACTTTGGAC 863
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 731 GAAGAAATTAACTGGTTGTTTCTTCTGTTAGGGCAAATGTTGGGATGCTGTACTTTGGAC 790
Query 864 CAACTCAGGTTCTATTGTCAGTTGAACAGTAAACATCGAACCGGTTCTAAGGATCGTGTT 923
||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 791 CAACTAAGGTACTTTTGTCAGTTGAATTCTAAACATCGAACCGGTTCTAAGGATCGTGTT 850
Query 924 CTCTACATAACTTATCTTGGTCTATGCAAACAGCTCGACCCCGAAGGACCATTTAGCCTG 983
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 851 GTCTACATAACTTATCTTAGTCTATGCAAACAGCTCGACCCCGAAGGACCATTTAACCTG 910
Query 984 TGACTTGTAA 993
|||||| |||
Sbjct 911 TGACTTATAA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5