BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931791
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 867 0.0
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 752 0.0
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 750 0.0
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 60.2 4e-08
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 60.2 4e-08
AT4G00240.1 | Symbols: PLDBETA2 | phospholipase D beta 2 | chr4... 58.4 1e-07
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 58.4 1e-07
AT1G46840.1 | Symbols: | F-box family protein | chr1:17270185-... 56.5 5e-07
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 867 bits (469), Expect = 0.0
Identities = 680/775 (88%), Gaps = 42/775 (5%)
Strand=Plus/Plus
Query 363 ATTGTCCATGGTTTATCCATCTGGTCCTGGTGATAGTAAAATTCTTACATTTGGAGATGG 422
||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct 655 ATTGTCCATATTTTATCCATCTGGTCCTGGTCATAGTAAAATTCTTACATTTGGGGCTGG 714
Query 423 AGATTTGAGGTGGAGAGAGATAAAATGTCCCGTACGATATGATCGACATGATATTATGAG 482
| || ||| ||||||| ||||||| |||||| ||||||||||| |||||||||||| |||
Sbjct 715 ACATATGAAGTGGAGAAAGATAAATTGTCCCTTACGATATGATAGACATGATATTAAGAG 774
Query 483 TGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGCAGC-C--C-------G---A 529
||||||||||||||||||||||||||||||||||||||| ||| | | | |
Sbjct 775 TGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGTAGCACGTCGGATTGTGTTAA 834
Query 530 --AT-G--AT-G-A-AATATCTGATTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAA 581
|| | || | | | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 835 GGATGGTCATGGCATAGTATCTGATTATGTGATAGTTTGCTTTGATATTAGGTCTGAGAA 894
Query 582 ATTCACCTTTATTGACGTAGAAAGGTTTTGTCGATTGATCAACTATAAGGGAAAATTAGC 641
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATTCACGTTTATTGACGTAGAAAGGTTTTGTCGATTGATCAACTATAAGGGAAAATTAGC 954
Query 642 TGTGATTTATTGGGAGGATGATGTCGACATTTATGAGCTTTATTA-TCAGGAGGGTATAG 700
|||||||||||||||||||||||||||||||||| |||||||||| || | |
Sbjct 955 TGTGATTTATTGGGAGGATGATGTCGACATTTATAAGCTTTATTATTC------G----G 1004
Query 701 ATGTCGACAAATATGTGGAGGAGAAT-CTAGAAGCTGATGCCATTAATGAGTTGCGTTTG 759
|||||||| ||||||||||| | ||| || | | ||||| |||||||||||||||| ||
Sbjct 1005 ATGTCGACGAATATGTGGAGTATAATATTA-ACGATGATGACATTAATGAGTTGCGTGTG 1063
Query 760 TGGATTCTAGAGGATGTTGAGAAACAAG-AATGGTCGAAATATGCCTATACTTGGACCGA 818
||| |||||||||||||| |||||| || ||||||||||||||||||| |||||||||||
Sbjct 1064 TGGGTTCTAGAGGATGTTAAGAAAC-AGCAATGGTCGAAATATGCCTACACTTGGACCGA 1122
Query 819 TGATAAATTCTTCCGTCGTC-TCGTTTCCATTGGTGGAGTGACTGCCTCGGGTGAGGTAG 877
||||| |||||||||||||| | |||||||| | ||||| |||||| |||||||| |||
Sbjct 1123 TGATAGATTCTTCCGTCGTCGT-GTTTCCATCGCTGGAGGGACTGCTTCGGGTGAAATAG 1181
Query 878 TGTTTTCGATGCGCAAGTATACAACAAAACAACCGTTTTATGTTTTTTACTTCAATCTCG 937
|||||||||||| ||| |||||| | || ||||||||||||||||| |||||||||| ||
Sbjct 1182 TGTTTTCGATGCTCAAATATACACCTAAGCAACCGTTTTATGTTTTCTACTTCAATCCCG 1241
Query 938 AAAGGAACACTCTCCAACGTGTTGAAATCAAAGGTTTTGGTGAAGCGTTTAAGGAAAA-T 996
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| |
Sbjct 1242 AAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAAGTGTTAAAG-AAAACT 1300
Query 997 TGTAGAGTTTGCACCTTTGTAAACCACGCAGAGGATCTTAATGTTAACGA-TTTAAAACA 1055
|||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||
Sbjct 1301 TGTAGAGTTTGCACCTTTGTAAACCACGTAGAGGATCTTAATGTTCACGACTTTAAA-CA 1359
Query 1056 ACTCAAGTCAGTCCATCCTCCATTGGTGGATAAATAAGATTCAGAATCAGACTAG 1110
|||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 1360 ACTCAAGTCAGTCCATCCCCCATTGGTGGATGAGCCAGATTCAGAATCAGACTAG 1414
Score = 270 bits (146), Expect = 2e-71
Identities = 218/252 (87%), Gaps = 7/252 (3%)
Strand=Plus/Plus
Query 112 gaagaagaagaagaTTGTGTGTGGAGCTTCTTCACGTCGCCTCAGCTTGAGAATTCATAT 171
|||| |||| || | ||||||||||| |||||| || |||| |||||||||||| |||||
Sbjct 329 GAAG-AGAA-AA-ACTGTGTGTGGAGGTTCTTCTCGACGCCACAGCTTGAGAATCCATAT 385
Query 172 GAGAAATCCTCGTCGACTCTTGTAGCTGCCGCTGAATTTTATG-TGAGATTCTCTCCAGA 230
||||||||||| |||||||||||||| |||||||||||| ||| | || |||||||||||
Sbjct 386 GAGAAATCCTCATCGACTCTTGTAGCAGCCGCTGAATTTCATGTTAAG-TTCTCTCCAGA 444
Query 231 CAATCTATGGATCAGTCATTTTTATGACCTAAAATATTTTTCAATTGGCTACGCCGCTGG 290
||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 445 CAAGCTATATATCTGTCATTGTTATGACCTAAAATATTTTTCAATTGGCTACGCCTCGGG 504
Query 291 CTTGCTCTATTTATATGGTAATAGATACCAGGCTAGACCTGTGATATGTAACCCCA-TCA 349
||| |||||||||||||| || || | |||||| |||| | ||||||||||||| | |
Sbjct 505 GTTGATCTATTTATATGGTGATCGAGGCGAGGCTACACCTCTAATATGTAACCCCACT-A 563
Query 350 CAGGACGGTATG 361
||||||||||||
Sbjct 564 CAGGACGGTATG 575
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 752 bits (407), Expect = 0.0
Identities = 627/731 (86%), Gaps = 23/731 (3%)
Strand=Plus/Plus
Query 363 ATTGTCCATGGTTTATCCATCTGGTCCTGGT-GAT-AGTAAAATTCTTACATTTGGAGAT 420
||||||||| | ||||||||||| ||||||| | | | |||||| |||||||| ||||||
Sbjct 480 ATTGTCCATTGCTTATCCATCTGATCCTGGTCG-TCA-TAAAATACTTACATTAGGAGAT 537
Query 421 GGAGATTTGAGGTGGAGAGAGATAAAATGTCCCGTACGATATGATCGACATGATATTATG 480
|||||| ||| |||||| |||| ||||||||||||| | |||| || ||||| |
Sbjct 538 GGAGATCTGACATGGAGAAAGATCAAATGTCCCGTAC-----CA-CGACCTGGTATTAAG 591
Query 481 AGTGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGCAGCCCG-AATGATGAAAT 539
|||| ||||||||||||||||| |||||||||| |||| || | | ||||| | |
Sbjct 592 GGTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTA-GCTGAGAGAAATGA-GCTAG 649
Query 540 A-TCTGATTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACCTTTATTGACG 598
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 650 AGTCTGATTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACATATATTGACG 709
Query 599 TAGAAAGGTTTTGTCGATTGATCAACTATAAGGGAAAATTAGCTGTGATTTATTGGGAGG 658
|||| ||| ||||||||||||| ||||| ||||| ||||||||| |||||||||||||||
Sbjct 710 TAGAGAGGATTTGTCGATTGATAAACTACAAGGGCAAATTAGCTATGATTTATTGGGAGG 769
Query 659 ATGATGTCGACATTTATGAGCTTTATTATCA-GGA-GGGTATAGA-TGTCGACAAATATG 715
|||||||||||||||||||| || || || | || ||| | ||| | | || || |||
Sbjct 770 ATGATGTCGACATTTATGAGATTAATCAT-ATGGCTGGG-A-AGAATCTTGATAAGTATT 826
Query 716 TGGAGGAGAATCTAGAAGCTGATGCCATTAATGAGTTGCGTTTGTGGATTCTAGAGGATG 775
||||||| ||||| || | |||||||| ||||||||||| | ||||| ||||||||||||
Sbjct 827 TGGAGGAAAATCTCGATGTTGATGCCACTAATGAGTTGCATGTGTGGGTTCTAGAGGATG 886
Query 776 TTGAGAAACAAGAATGGTCGAAATATGCCTATACTTGGACCGATGATAAATTCTTCCGTC 835
|||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||
Sbjct 887 TTGAGAAACAGGAATGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTC 946
Query 836 GTCTCGTTTCCATTGGTGGAGTGACTGCCTCGGGTGAGGTAGTGTTTTCGATGCGCAAGT 895
||| | ||||||||| ||||| |||| |||||||| ||||||||||||| |||||||
Sbjct 947 GTCACCTTTCCATTGCTGGAGCCACTGTTTCGGGTGAAATAGTGTTTTCGATACGCAAGT 1006
Query 896 ATACAACAAAACAACCGTTTTATGTTTTTTACTTCAATCTCGAAAGGAACACTCTCCAAC 955
| ||| | |||||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 1007 ACACATCTAAACAACCGTTTTATGTTTTCTACTTCAATCCCGAATCGAACACTCTCCAAC 1066
Query 956 GTGTTGAAATCAAAGGTTTTGGTGAAGCGTTTAAGG-A-AAA-TTGTAGAGTTTGCACCT 1012
|||| |||| | |||||||||||||||| ||||||| | ||| |||||| ||| ||||||
Sbjct 1067 GTGTAGAAACCCAAGGTTTTGGTGAAGCATTTAAGGCAGAAACTTGTAGCGTTCGCACCT 1126
Query 1013 TTGTAAACCACGCAGAGGATCTTAATGTTAACGATTTAAAACAACTCAAGTCAGTCCATC 1072
|||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1127 TTGTAAACCACGTAGAGAATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGGCCATC 1186
Query 1073 CTCCATTGGTG 1083
|||||||||||
Sbjct 1187 CTCCATTGGTG 1197
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 750 bits (406), Expect = 0.0
Identities = 646/753 (86%), Gaps = 51/753 (7%)
Strand=Plus/Plus
Query 363 ATTGTCCATGGTTTATCCATCTGGTCCTGGTGATAGTAAAATTCTTACATTTGGAGATGG 422
||||||||||||||||||||||||||||||| |||||| | || |||||||||||| |||
Sbjct 522 ATTGTCCATGGTTTATCCATCTGGTCCTGGTCATAGTAGAGTTATTACATTTGGAGCTGG 581
Query 423 AGATTTGAGGTGGAG-AGAGATAAAATGTCCCGTACGATATGATCGACATGATATTATGA 481
|||| ||| |||||| || |||||||||| | | || || ||||||||||||| ||
Sbjct 582 AGATCTGAAGTGGAGAAG-GATAAAATGT----T-C-AT-TG--CGACATGATATTAAGA 631
Query 482 GTGAAGGGATATGCATCAATGGAGTTTTGTATTACTTA-G-G-CA-GCCCGA----A-T- 531
|||||||| |||| |||||||| ||||||||||||||| | | || | | || | |
Sbjct 632 GTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAGGTGACACGTCGGATTGGAGTC 691
Query 532 --G---AT-G-AA--A--T-A--TCTGATTATGTGATAGTTTGCTTTGATGTTAGGTCTG 577
| || | || | | | |||| |||| |||||||||||||||||||||||||||
Sbjct 692 GCGTTAATGGTAATCACGTAACGTCTGGTTATATGATAGTTTGCTTTGATGTTAGGTCTG 751
Query 578 AGAAATTCACCTTTATTGACGTAGAAAGGTTTTGTCGATTGATCAACTATAAGGGAAAAT 637
| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||
Sbjct 752 AAAAATTCACCTTTATTGACGTAAAAAGGTTTTGTCGATTGATAAACTACAAGGGCAAAT 811
Query 638 TAGCTGTGATTTATTGGGAGGATGATGTCGACATTTATGAGCTTTATTATC-AGGAGGGT 696
||||||||||||||||||||||||||||||||||| | ||||||||||| | | |||||
Sbjct 812 TAGCTGTGATTTATTGGGAGGATGATGTCGACATTCAAGAGCTTTATTA-CAAAAAGGGT 870
Query 697 ATAGATGTCGACAAATATGTGGAGGAGAATCTAGAA-GCTGATGCCATTAATGAGTTGCG 755
||||||||||| ||||||||||| | ||| | || |||||||||| |||||||||| |
Sbjct 871 ATAGATGTCGAGGAATATGTGGAGAATAATGT-CAACGCTGATGCCACTAATGAGTTGTG 929
Query 756 TTTGTGGATTCTAGAGGATGTTGAGAAACAAGAATGGTCGAAATATGCCTATACTTGGAC 815
| |||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 930 TGTGTGGATTCTAGCGGATGTTGAGAAACAGGAATGGTCGAAACATGCCTACACTTGGAC 989
Query 816 CGATGATAAA-TTCTTCCGTCGTCTCGTTTCCATTGGTGGAGTGACTGCCTCGGGTGAGG 874
|||||| ||| |||||||||||| | || ||||| | |||||||||||| ||||||||
Sbjct 990 CGATGA-AAAGTTCTTCCGTCGTTTGGTATCCATCGCTGGAGTGACTGCTTCGGGTGAAA 1048
Query 875 TAGTGTTTTCGATGCGCAAGTATACA-ACAAAACAACCGTTTTATGTTTTTTACTTCAAT 933
||||||||||||||||||||| || | | ||||||||||||||||| ||||||||||||
Sbjct 1049 TAGTGTTTTCGATGCGCAAGTGTA-ATCCTAAACAACCGTTTTATGTGTTTTACTTCAAT 1107
Query 934 CTCGAAAGGAACACTCTCCAACGTGTTGAAA-TCAAAGGTTTTGGTGAAG-CGTTTAAGG 991
| ||||||||||| ||||||||||||||||| || ||||||||||||||| || || | |
Sbjct 1108 CCCGAAAGGAACAGTCTCCAACGTGTTGAAATTC-AAGGTTTTGGTGAAGCCG-TT-ACG 1164
Query 992 AAA-ATTGTAGA-GTTTGCACCTTTGTAAACCACGCAGAGGATCTTAATGTTAACGATTT 1049
||| |||| || |||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1165 AAATCTTGT-GACGTTTGCACCTTTGTAAACCACGTAGAGGATCTCAATGTTTACGATTT 1223
Query 1050 AAAACAACTCAAGTCAGTCCATCCTCCATTGGT 1082
|||||||||||||||||||||||||||||||||
Sbjct 1224 AAAACAACTCAAGTCAGTCCATCCTCCATTGGT 1256
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 60.2 bits (32), Expect = 4e-08
Identities = 90/116 (78%), Gaps = 11/116 (9%)
Strand=Plus/Plus
Query 553 ATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACCTTT-ATTGACGTAGAA-A--GGTT 608
|||| ||||||||||||||||||||||||||||| ||| || | | | || | |||
Sbjct 679 ATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAA-TTTCATAGCCACAAAACATCGGTA 737
Query 609 TTG-TC-GATTGATCAACTATAAGGGAAAATTA-GCTGTGATTTATTGGGAGGATG 661
| || | ||||| ||||||||||| |||||| | || |||| ||| |||| |||
Sbjct 738 C-GATCAG-TTGATAAACTATAAGGGGAAATTATG-TGGGATTAATTTGGAGTATG 790
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 60.2 bits (32), Expect = 4e-08
Identities = 72/91 (79%), Gaps = 4/91 (4%)
Strand=Plus/Plus
Query 493 TGCATCAAT-GGAGTTTTGTATTACTTAGGC-AGCCCGAATGATGAAATATCTGATTATG 550
||||||||| ||| ||||||||||| || || | ||| ||| ||| | | |||
Sbjct 643 TGCATCAATGGGA-TTTTGTATTACCTA-GCTAAAATTAATTATGCAATGGATAAAAATG 700
Query 551 TGATAGTTTGCTTTGATGTTAGGTCTGAGAA 581
|| ||||||||||||||||||||||||||||
Sbjct 701 TGCTAGTTTGCTTTGATGTTAGGTCTGAGAA 731
> AT4G00240.1 | Symbols: PLDBETA2 | phospholipase D beta 2 | chr4:106380-110718
REVERSE LENGTH=2784
Length=2784
Score = 58.4 bits (31), Expect = 1e-07
Identities = 41/45 (91%), Gaps = 4/45 (9%)
Strand=Plus/Plus
Query 50 CATTGGATCCTCCTACGACTGGAATGCTAGCTCACAAGGACATAG 94
|||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1926 CATTGGATCCTCCTACGACTGGAATGCT--C--ACAAGGACATAG 1966
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 553 ATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCA 586
|||| |||||||||||||||||||||||||||||
Sbjct 457 ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCA 490
> AT1G46840.1 | Symbols: | F-box family protein | chr1:17270185-17271706
FORWARD LENGTH=1428
Length=1428
Score = 56.5 bits (30), Expect = 5e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 486 AGGGATATGCATCAATGGAGTTTTGTATTACTTAGG 521
||||||||||||||||||||||||||||| | ||||
Sbjct 690 AGGGATATGCATCAATGGAGTTTTGTATTTCATAGG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5