BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931793

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16210.1 | Symbols:  | Transcriptional factor B3 family prot...   261    2e-69
  AT5G46915.1 | Symbols:  | transcriptional factor B3 family prot...   231    2e-60


> AT2G16210.1 | Symbols:  | Transcriptional factor B3 family protein 
| chr2:7026763-7029054 REVERSE LENGTH=1170
Length=1170

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 169/182 (93%), Gaps = 4/182 (2%)
 Strand=Plus/Plus

Query  68   TGGGAAGAAATCATGGAATGTGGTTTATCTAGG-GAGGTTTGGAGCTTTCTCTAGTGGAT  126
            |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct  778  TGGGAAGAAATCATGGAATGTGGTTTATCT-GGAGAGGTTTGGAGCTTTCTCTGGTGGAT  836

Query  127  GGCGCT-GTGTGGTTAAAGAGTATCCCCTTGTTGTTGGGGATACCTGCAAATTTACATTC  185
            |||| | |||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct  837  GGCG-TCGTGTGGTTAAAGAGTATCCCCTTGCTGTTGGTGATACCTGCAAATTCACATTC  895

Query  186  ATCAAACCAGACGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATAATGTATGTGAGGG  245
            ||||||||| | |||||||||||||||||||||||||||||||||  ||| |||||||||
Sbjct  896  ATCAAACCAAAGGAGCTACTTCTAGTTGTCTCCAAACCCTAATGAGGATGGATGTGAGGG  955

Query  246  TG  247
            ||
Sbjct  956  TG  957


 Score =  100 bits (54),  Expect = 5e-21
 Identities = 62/66 (94%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  3    AAAGAGCTGTCTCGTAAGATGAAGATAAGAGCGCAATGGGGAAGCTCTTGGGAAGTAGCA  62
            |||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  200  AAAGAGCTCTCACGTAAGATGAAGATAAGAGCGCAATGGGGAAACTCTTGGGAAGTAGGA  259

Query  63   ATCTCT  68
            ||||||
Sbjct  260  ATCTCT  265


> AT5G46915.1 | Symbols:  | transcriptional factor B3 family protein 
| chr5:19051568-19053200 REVERSE LENGTH=867
Length=867

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 166/185 (90%), Gaps = 6/185 (3%)
 Strand=Plus/Plus

Query  68   TGGGAAGAAATCATGGAATGTGGTTTATCTAGGGAGGTT-TGGAGCTTTCTCTAGTGGAT  126
            |||||||||||  ||||||||||| ||||| |||| ||| ||||||||||||| ||||||
Sbjct  669  TGGGAAGAAATTTTGGAATGTGGTGTATCTGGGGA-GTTATGGAGCTTTCTCTGGTGGAT  727

Query  127  GGCGCTGTGTGGTTAAAGAGTATCCCCTTGTTGTTGGGG----ATACCTGCAAATTTACA  182
            |||  ||| ||||||||||||||||||||||||||||||    |||||||||| ||||||
Sbjct  728  GGCAATGTTTGGTTAAAGAGTATCCCCTTGTTGTTGGGGATATATACCTGCAAGTTTACA  787

Query  183  TTCATCAAACCAGACGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATAATGTATGTGA  242
            ||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct  788  TTCATCAAACCGGAGGAGCTACTTCTAGTTGTCTCCAAACCCTAATGATGATGGATGTGA  847

Query  243  GGGTG  247
            |||||
Sbjct  848  GGGTG  852



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5