BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931794
Length=476
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 492 1e-138
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 438 2e-122
AT2G16220.1 | Symbols: | F-box and associated interaction doma... 383 9e-106
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 366 9e-101
AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family... 67.6 1e-10
AT3G23960.1 | Symbols: | F-box and associated interaction doma... 60.2 2e-08
AT2G31470.1 | Symbols: DOR | F-box and associated interaction d... 58.4 6e-08
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 492 bits (266), Expect = 1e-138
Identities = 412/481 (86%), Gaps = 16/481 (3%)
Strand=Plus/Plus
Query 1 CCTCTGGCTTGATCTACATCCATGGTGATCGATATATACCAGGCTAGACCTGTGATATGT 60
||| |||||||||||| ||| ||||| |||| | || |||||||||| | ||||||
Sbjct 365 CCTTTGGCTTGATCTATATCTATGGTAATCG----AGGCCGGGCTAGACCTCTAATATGT 420
Query 61 AACCCCATC-ACAGGACGGTATGCGATCTTACCTGATCGGTATACCTACAGAAAGGCGTA 119
||||||| | |||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 421 AACCCCA-CTACAGGACGGTATGCCATCTTACCTAATCGGTATACTTACAGAAAGGCGTT 479
Query 120 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGTATTGTCCATGGCTTATCC 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 480 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGCATTGTCCATGGTTTATCC 539
Query 180 ATTTGGTCCTGGTCATCA-TAAAATTCTTACATTTGGAGATGGAGATATGACGTGGAGAA 238
|| ||||||||||||| | || | || |||||||||||| ||||||| ||| ||||||||
Sbjct 540 ATCTGGTCCTGGTCAT-AGTAGAGTTATTACATTTGGAGCTGGAGATCTGAAGTGGAGAA 598
Query 239 AGATAAAATGTACCTTACGACATGAAAGTAGGAGTGAAGGGATATGCATCAATGGTGTTT 298
|||||||||| | || |||||||| | || |||||||||| |||| |||||||| ||||
Sbjct 599 GGATAAAATGTTCATTGCGACATGATATTAAGAGTGAAGGGGTATGTATCAATGGGGTTT 658
Query 299 TGTATTACCTAGGTGACACGTCGCAATGT-GTT-CATTATAATGCTCATTGTGTAACGTC 356
|||||||| |||||||||||||| | || || | ||| | || | || ||||||||
Sbjct 659 TGTATTACTTAGGTGACACGTCGGATTGGAGTCGCGTTA-A-TGGTAATCACGTAACGTC 716
Query 357 TCGTTATGTGATAGTTTGCTTTCATGTTAGGTCTGAAAAATTCACCTTTATTAACGTGGA 416
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 717 TGGTTATATGATAGTTTGCTTTGATGTTAGGTCTGAAAAATTCACCTTTATTGACGTAAA 776
Query 417 AAGGTTTTGTCGATTGATCAACTATATAAGGGCAATTTAGCTGTGATTT-TCTGGAAGGA 475
|||||||||||||||||| ||||| | | |||||| ||||||||||||| | ||| ||||
Sbjct 777 AAGGTTTTGTCGATTGATAAACTACA-A-GGGCAAATTAGCTGTGATTTAT-TGGGAGGA 833
Query 476 T 476
|
Sbjct 834 T 834
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 438 bits (237), Expect = 2e-122
Identities = 385/452 (85%), Gaps = 28/452 (6%)
Strand=Plus/Plus
Query 41 AGGCTAGACCTGTGATATGTAACCCCATC-ACAGGACGGTATGCGATCTTACCTGATCGG 99
|||||| |||| | ||||||||||||| | |||||||||||||| ||||||||| |||||
Sbjct 534 AGGCTACACCTCTAATATGTAACCCCA-CTACAGGACGGTATGCCATCTTACCTAATCGG 592
Query 100 TATACCTACAGAAAGGCGTATAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAG 159
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 593 TATACTTACAGAAAGGCGTATAGCTTTTTCGGATTTGACCCGATTGACAAGCAATACAAG 652
Query 160 GTATTGTCCATGGCTTATCCATTTGGTCCTGGTCATCA-TAAAATTCTTACATTTGGAGA 218
| ||||||||| |||||||| ||||||||||||| | |||||||||||||||||| |
Sbjct 653 GCATTGTCCATATTTTATCCATCTGGTCCTGGTCAT-AGTAAAATTCTTACATTTGGGGC 711
Query 219 TGGAGATATGACGTGGAGAAAGATAAAATGTACCTTACGACATG--A-A-A-G----TAG 269
|||| |||||| ||||||||||||||| ||| |||||||| ||| | | | | ||
Sbjct 712 TGGACATATGAAGTGGAGAAAGATAAATTGTCCCTTACGATATGATAGACATGATATTAA 771
Query 270 GAGTGAAGGGATATGCATCAATGGTGTTTTGTATTACCTAGGTGA-CACGTCGCAATGTG 328
|||||||||||||||||||||||| |||||||||||| ||||| | ||||||| | ||||
Sbjct 772 GAGTGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAGGT-AGCACGTCGGATTGTG 830
Query 329 TTCATTATAATGCTCATTGTGTA-ACGTCTC-G-TTATGTGATAGTTTGCTTTCATGTTA 385
|| | | ||| ||| || | | | || || | ||||||||||||||||||| || |||
Sbjct 831 TT-A--AGGATGGTCA-TG-GCATA-GTATCTGATTATGTGATAGTTTGCTTTGATATTA 884
Query 386 GGTCTGAAAAATTCACCTTTATTAACGTGGAAAGGTTTTGTCGATTGATCAACTATATAA 445
||||||| |||||||| |||||| |||| |||||||||||||||||||||||||||| |
Sbjct 885 GGTCTGAGAAATTCACGTTTATTGACGTAGAAAGGTTTTGTCGATTGATCAACTATA-A- 942
Query 446 GGGCAATTTAGCTGTGATTT-TCTGGAAGGAT 476
||| || ||||||||||||| | ||| |||||
Sbjct 943 GGGAAAATTAGCTGTGATTTAT-TGGGAGGAT 973
> AT2G16220.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7030155-7031378 REVERSE LENGTH=1224
Length=1224
Score = 383 bits (207), Expect = 9e-106
Identities = 393/478 (82%), Gaps = 31/478 (6%)
Strand=Plus/Plus
Query 1 CCTCTGGCTTGATCTACATCCATGGTGATCGATATATACCAGGCTAGACCTGTGATATGT 60
|||||||||||||||| | |||||||||| |||| |||||| |||| ||||||||
Sbjct 335 CCTCTGGCTTGATCTATTTATATGGTGATCG----ATACGAGGCTACACCTCTGATATGT 390
Query 61 AACCCCATCACAGGACGGTATGCGATCTTACCTGA-TCGGTATACCTACAGAAAGGCGTA 119
||||||| ||||||| ||||| ||||||||||| | | | ||||| || ||||||||||
Sbjct 391 AACCCCAACACAGGAAGGTATACGATCTTACCTAAGT-GCTATACTTATAGAAAGGCGTT 449
Query 120 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGTATTGTCCATGG-CTTATC 178
||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||
Sbjct 450 TAGCTTTTTCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCATGATCT-ATC 508
Query 179 CATTTGGTCCTGGTCATCA-TAAAATTCTTACATTTGGAGATGGAGATATGACGTGGAGA 237
||| |||||||||||| || |||||||||||| ||||||||||| ||||||| |||| |
Sbjct 509 CATCTGGTCCTGGTCA-CAGTAAAATTCTTACTTTTGGAGATGGGGATATGAATTGGAAA 567
Query 238 AAGATAAAATGTACCT-TACGACATGAAAGT-AGGAGTGAAGGGATATGCATCAATGGTG 295
|||||||||| | | | ||| |||||| | | | ||| |||||||||||||||||||||
Sbjct 568 AAGATAAAATAT-CGTGTACTACATGATATTTAC-AGTCAAGGGATATGCATCAATGGTG 625
Query 296 TTTTGTATTACCTAGGTGACACGTC-GCAATGTGTTCATTATAATGCTCATTG-TGTAAC 353
||||||||||| ||||||||||||| | | || | || | | || |||| | ||||||
Sbjct 626 TTTTGTATTACTTAGGTGACACGTCAG-ATTGGG---AT-A-A-TGATCAT-GATGTAAC 677
Query 354 GTCTCGTTATGTGATAGTTTGCTTTCATGTTAGG-TCTGAAAAATTCACCTTTATTAACG 412
|||| || ||||| ||||||||||| || ||| | || |||| |||||||||||| |
Sbjct 678 GTCTGGTAATGTGTTAGTTTGCTTTGAT-TTAAGATCCGAAAGTTTCACCTTTATTGGCT 736
Query 413 TGGAAAGGTTTTGTCGATTGATCAACTATATAAGGGCAATTTAGCTGTGATTTTCTGG 470
| ||| | | ||| |||||| ||||||| | |||||| |||||||| ||||| |||
Sbjct 737 TAGAATG-TG--GTCAATTGATAAACTATA-A-GGGCAAATTAGCTGTAATTTTTTGG 789
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 366 bits (198), Expect = 9e-101
Identities = 393/481 (82%), Gaps = 37/481 (8%)
Strand=Plus/Plus
Query 1 CCTCTGGCTTGATCTACATCCATGGTGATCGATATATACCAGGCTAGACCTGTGATATGT 60
||||||||||||| || ||| |||||||||| |||| |||||||||| | ||||||
Sbjct 323 CCTCTGGCTTGATATATATCTATGGTGATCG----ATACGTGGCTAGACCTCTAATATGT 378
Query 61 AACCCCATCACAGGACGGTATGCGATCTTACCTGATCGGTATACCTACAGAAAGGCGTAT 120
||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct 379 AACCCCAACACAGGACGGTATGTGATCTTACCTAATCGGTATACTTACAGAAAGGCGTAT 438
Query 121 AGCTTTTTCGGGTTTGACCCAATTGACAAGCAATACAAGGTATTGTCCATGGCTTATCCA 180
|||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||
Sbjct 439 AGCTTTTTCGGGTTTGACCCGATTGGCAAGCAATACAAGGCATTGTCCATTGCTTATCCA 498
Query 181 TTTGGTCCTGGTCATCATAAAATTCTTACATTTGGAGATGGAGATATGACGTGGAGAAAG 240
| || |||||||| ||||||||| |||||||| |||||||||||| |||| |||||||||
Sbjct 499 TCTGATCCTGGTCGTCATAAAATACTTACATTAGGAGATGGAGATCTGACATGGAGAAAG 558
Query 241 ATAAAATGTACCTTACGAC-A--TGAAAGTA-GGAGTGAAGGGATATGCATCAATGGTGT 296
|| |||||| || ||| || | || | || || |||| ||||||||||||||||| ||
Sbjct 559 ATCAAATGTCCCGTACCACGACCTGGTATTAAGG-GTGATGGGATATGCATCAATGGGGT 617
Query 297 TTTGTATTACCTAGGTGACACGTCGCAATGTGTTCATTATAATGCTCATTGTGTAACGTC 356
|||||||| | ||| ||| | | |||| | | | | | | || | | | |
Sbjct 618 TTTGTATTTCTTAGCTGAGA-GA---AATGAG--C-T-AGA--G-TC-T-G---A---T- 657
Query 357 TCGTTATGTGATAGTTTGCTTTCATGTTAGGTCTGAAAAATTCACCTTTATTAACGTGGA 416
| ||||||||||||||||| ||||||||||||| |||||||| | |||| |||| ||
Sbjct 658 T----ATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCACATATATTGACGTAGA 713
Query 417 AAGGTTTTGTCGATTGATCAACTATATAAGGGCAATTTAGCTGTGATTT-TCTGGAAGGA 475
||| ||||||||||||| ||||| | | |||||| |||||| |||||| | ||| ||||
Sbjct 714 GAGGATTTGTCGATTGATAAACTACA-A-GGGCAAATTAGCTATGATTTAT-TGGGAGGA 770
Query 476 T 476
|
Sbjct 771 T 771
> AT1G20657.1 | Symbols: | Pseudogene of AT3G61340; F-box family
protein | chr1:7161890-7163076 REVERSE LENGTH=1187
Length=1187
Score = 67.6 bits (36), Expect = 1e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 273 TGAAGGGATATGCATCAATGGTGTTTTGTATTACCTAGG 311
||| |||||||||||||||||||||||||||||||||||
Sbjct 671 TGATGGGATATGCATCAATGGTGTTTTGTATTACCTAGG 709
> AT3G23960.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8657736-8658944 FORWARD LENGTH=1209
Length=1209
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 279 GATATGCATCAATGGTGTTTTGTATTACCTAG 310
||||||||||||||||||||||||||||||||
Sbjct 705 GATATGCATCAATGGTGTTTTGTATTACCTAG 736
> AT2G31470.1 | Symbols: DOR | F-box and associated interaction
domains-containing protein | chr2:13407492-13408655 REVERSE
LENGTH=1164
Length=1164
Score = 58.4 bits (31), Expect = 6e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 275 AAGGGATATGCATCAATGGTGTTTTGTATTA 305
|||||||||||||||||||||||||||||||
Sbjct 668 AAGGGATATGCATCAATGGTGTTTTGTATTA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22655600297
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5