BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931796

Length=236
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16225.1 | Symbols:  | Maternally expressed gene (MEG) famil...   220    3e-57


> AT2G16225.1 | Symbols:  | Maternally expressed gene (MEG) family 
protein | chr2:7033940-7034317 REVERSE LENGTH=267
Length=267

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 169/193 (88%), Gaps = 3/193 (2%)
 Strand=Plus/Plus

Query  27   GGGTGGCGAGATACATAGATCAATGCTCAATATTACAATACCACCGTGTATCAAAACCTT  86
            |||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  75   GGGTGGAGCTATACATAGATCGATGCTCAATATTACAATACCACCGTGTATCAAAACCTT  134

Query  87   TTGCAAGATA-T--CATTCAAAAAGGATCGTTGGTGTTGTTTCGGACCAAGAGCTAAGAA  143
            ||||||| || |  ||||  ||||| || ||||||||||||||||||| |||||||||||
Sbjct  135  TTGCAAGGTACTAACATTTGAAAAGCATTGTTGGTGTTGTTTCGGACCGAGAGCTAAGAA  194

Query  144  GGAACGTTGTTGGAAAGAAGAAGATTATCCTAATGCCAAAGAGCTATGCTACGCCAGATG  203
              ||| ||||||||| ||| || | |||||||| ||||||||||||||||||||  | ||
Sbjct  195  AAAACTTTGTTGGAATGAACAAAAATATCCTAACGCCAAAGAGCTATGCTACGCTGGGTG  254

Query  204  TATAATAGAATAA  216
            |||||||||||||
Sbjct  255  TATAATAGAATAA  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10656762788


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5