BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931809
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69730.1 | Symbols: | Wall-associated kinase family protein... 494 2e-138
AT1G79680.1 | Symbols: WAKL10, ATWAKL10 | WALL ASSOCIATED KINAS... 292 6e-78
AT1G65365.1 | Symbols: | pseudogene, putative protein kinase, ... 281 1e-74
> AT1G69730.1 | Symbols: | Wall-associated kinase family protein
| chr1:26228632-26231339 REVERSE LENGTH=2450
Length=2450
Score = 494 bits (267), Expect = 2e-138
Identities = 647/822 (79%), Gaps = 60/822 (7%)
Strand=Plus/Plus
Query 618 TGCAATGGGT-TTCAATGCTGCGAGGCAAACATGC-CTAC--TCAG-ATTCAACAGATTG 672
|||||| ||| || ||||||| | ||| |||||| | | | || |||||||||||||
Sbjct 613 TGCAAT-GGTATTGGATGCTGCAATGCATACATGCGCGGCGGT-AGTATTCAACAGATTG 670
Query 673 TTGGTGTGAGAATTGATAGCACCACAACAACCGGAGGGTGCAAAGTTGCCTTCTTAACAG 732
||||||| | ||| || | ||||| ||| | |||||||||||||||||||||| |||
Sbjct 671 TTGGTGTCACAATAGAAAACACCATAACGA---GAGGGTGCAAAGTTGCCTTCTTGACAA 727
Query 733 ACGAGGAATACTCTTT-TTTAAATGGTTCTGATCCG-AAACGACTTCATGCTAAAGGA-A 789
|| ||| | | | ||| | | ||| ||||||||| ||| | |||||||||| |||| |
Sbjct 728 ACAAGGCAGAATATTTGTCT-AATAAATCTGATCCGCAAAAG-CTTCATGCTAGAGGATA 785
Query 790 CATCAACCGTTGAGCTAGGATGGTTCATCCATACTTCGAATCGTTCGTATGTAGATTCTT 849
|| || || |||||||||||||| |||||||| |||||| ||||| | || | |||
Sbjct 786 CA-GTACGGTCGAGCTAGGATGGTTTATCCATACGACGAATCATTCGTTTATAAAGTCTC 844
Query 850 TAGGATGCCAAAGTTATGAAACTATGTCTAGGCTTAA-AAGGGAAGGCT--A-TAATGCT 905
| |||||| | || | | ||| | | || | || || ||| | | | || | |
Sbjct 845 TGGGATGCTATAG-TGT-AAA--A-GAGTA--C--AACAA-TGAAAGATACACTAGTACC 894
Query 906 TATGA-AAGTACTT-TTGGAATAAGTTGTTTTTGCGACT-ATAATGCTTATCTAAGCTAT 962
| || ||| | || || ||||||| | ||||| | | ||||||||||||||||||
Sbjct 895 CA-GAGAAG-AATTAACATAACAAGTTGTATATGCGA-TGACAATGCTTATCTAAGCTAT 951
Query 963 GCAAGATGCTCATGCAATGA-CGGTTACCAAGGCAACCCATACCTTCAAGGAGGAGGCGG 1021
|||||||||||||||| | | |||| ||||||||||||||| | | | ||||||
Sbjct 952 GCAAGATGCTCATGCACT-AGGGGTTTCCAAGGCAACCCATA-C--C---GTTTAGGCGG 1004
Query 1022 ATGCAAAGATGTTAATGAATGTCTAGAA-AAGGACTATGATGGAAATTAC-AAATGTATG 1079
|||||||||| | |||||||| || || || || | || || || || | || ||
Sbjct 1005 ATGCAAAGATATCAATGAATG--TA-AAGAA-GA--A-GA-GGGCATGACTTACTG--TG 1054
Query 1080 GGAGGGAC--GTGTGTCGATTTGCAGGGACACTATGAATGTGAGTACAAAAAACATCGGC 1137
||| || |||||| ||||||| ||||||| | |||||| |||||| || |||||||
Sbjct 1055 GGACCAACAAATGTGTCAATTTGCAAGGACACTTTAAATGTGTGTACAACAATCATCGGC 1114
Query 1138 CACTCGCTATAGGGTTTGGTTCGAGTTTTGGCTCATTGATTTTTATTGTTGGAATATACT 1197
|||| ||||||||| ||||| | ||||||||||||||||| ||| |||||||||||||||
Sbjct 1115 CACTTGCTATAGGGCTTGGTGCTAGTTTTGGCTCATTGATCTTTGTTGTTGGAATATACT 1174
Query 1198 GGTTATACAAATTTATGAGAAAGCAAAAGAGGTTAAAGCAAAAGAAGAAGTTCTTCAAGC 1257
||||||||||||||| | |||||||| || |||||| ||||||||||||||||||||||
Sbjct 1175 TGTTATACAAATTTATTAAAAAGCAAAGGAAGTTAAACCAAAAGAAGAAGTTCTTCAAGC 1234
Query 1258 GTAATGGGGGTCTATTGTTGCAACAACAATTGACTGCAACAGAAGGCAACGTCGAGAAGA 1317
||||||| ||||||||||||||||||||||||| | |||||| ||||| ||||| ||||
Sbjct 1235 GTAATGGTGGTCTATTGTTGCAACAACAATTGATTTCAACAGTAGGCATGGTCGAAAAGA 1294
Query 1318 CAAAAGTGTTCACTTCGAGAGAGTTGGAAAAAGCTACTGAAAACTTTAACTT-AAATAGA 1376
||| |||||||| |||| |||||||||| ||||||||||||||||| | || ||| |||
Sbjct 1295 CAATAGTGTTCAGTTCGCGAGAGTTGGAGAAAGCTACTGAAAACTTCAG-TTCAAACAGA 1353
Query 1377 ATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAAGGAATG 1418
|||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1354 ATACTTGGCCAGGGTGGTCAAGGTACAGTGTACAAGGGAATG 1395
> AT1G79680.1 | Symbols: WAKL10, ATWAKL10 | WALL ASSOCIATED KINASE
(WAK)-LIKE 10 | chr1:29979973-29982773 REVERSE LENGTH=2549
Length=2549
Score = 292 bits (158), Expect = 6e-78
Identities = 313/386 (81%), Gaps = 18/386 (5%)
Strand=Plus/Plus
Query 1418 GACACTT-GCAACTTATTTCATTTTTGCAATGAAACATAATACACTCTTTGACATCATCG 1476
|||| || ||||||||||||| | ||||||||||| | || | ||||| ||||| || |
Sbjct 1956 GACA-TTGGCAACTTATTTCACTCTTGCAATGAAAGAGAACAGACTCTCCGACATTATTG 2014
Query 1477 ACCCGCGAATTAGAGATGGCTGCAAGTTGAATCAAGTGACTGCAGCTGCAAAAATTGCAA 1536
| | ||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 2015 ATGCTCGAATAAGAGATGGTTGTAAGTTGAATCAAGTGACAGCAGCCGCAAAAATTGCAA 2074
Query 1537 GGAAATGTTTGAATATGAAGGGAAG-AAAGCGACCAAGCATGAGAGAAGTATCCATGGAG 1595
||||||||||||||||||||||||| ||| |||||||| |||||| ||||||| |||||
Sbjct 2075 GGAAATGTTTGAATATGAAGGGAAGGAAA-CGACCAAGTATGAGACAAGTATCGATGGAA 2133
Query 1596 TTAGAGAAGATTCGTTCATCTTCTGGAGATATGCAGCCAG-ATGAGTATGTTAGCGAAAA 1654
|| |||||||||||||||| ||||| |||||||||||| | ||||||||| |||||||||
Sbjct 2134 TTGGAGAAGATTCGTTCATATTCTGAAGATATGCAGCC-GTATGAGTATGCTAGCGAAAA 2192
Query 1655 TGAGGAAGAAAGAGAGGAAGGAGTCGTGGAAGTTAATATAGAG--GTAGAATCGTGGCAC 1712
|| ||||||| | | ||| | | ||||| ||||| ||||| | |||| | | ||
Sbjct 2193 CGAAGAAGAAAAAAAAGAAACATTAGTGGACGTTAACGTAGAGTCG-AGAAAC-T---AC 2247
Query 1713 AATGTGGCTGTTACTGCTC-CAACGTATCAATGCAACAATGCGGCATCATCTTCATTGTG 1771
|| | |||||| || | || | | ||||| || || ||| || ||||||| | | |
Sbjct 2248 G-TGAG--TGTTACCGC-CGCATCATCTCAATACAGCATTGCTACAACATCTTCGTCGCG 2303
Query 1772 GTCGGATGTTGAACCATTGTTTCCTC 1797
||| ||||||||||||||||||||||
Sbjct 2304 GTCAGATGTTGAACCATTGTTTCCTC 2329
> AT1G65365.1 | Symbols: | pseudogene, putative protein kinase,
blastp match of 45% identity and 1.7e-40 P-value to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944
Putative protein kinase
{Oryza sativa (japonica cultivar-group)} | chr1:24282516-24284206
REVERSE LENGTH=1691
Length=1691
Score = 281 bits (152), Expect = 1e-74
Identities = 212/240 (88%), Gaps = 7/240 (3%)
Strand=Plus/Plus
Query 1182 ATTGTTGGAATATACTGGTTATACAAATTTATG-AGAAAGCAAAAGAGGTTAAAGCAAAA 1240
|||| |||| |||| |||||||| ||||||| | ||||| |||| |||| |||| |||||
Sbjct 972 ATTGGTGGAGTATATTGGTTATA-AAATTTA-GTAGAAAACAAATGAGGCTAAACCAAAA 1029
Query 1241 GAAG-AAGTTCTTCAAGCGTAATGGGGGTCTATTGTTGCAACAACAATTGACTGCAACAG 1299
| || ||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 1030 G-AGAAAGTTCTTCAAACGTACTGGGGGTTTATTGTTGCAACAACAATTGACTTCAACAG 1088
Query 1300 AAGGCAACGTCGAGAAGACAAAAGTGTTCA-CTTCGAGAGAGTTGGAAAAAGCTACTGAA 1358
||||||| ||||||||||||| |||||||| | ||||| ||||| || ||||| ||||||
Sbjct 1089 AAGGCAATGTCGAGAAGACAAGAGTGTTCAGC-TCGAGTGAGTTAGAGAAAGCCACTGAA 1147
Query 1359 AACTTTAACTTAAATAGAATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAAGGAATG 1418
||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1148 AACTTCAGCCTAAATAGAATACTTGGTCAGGGTGGTCAAGGTACTGTGTACAAGGGAATG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5