BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931813
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16360.1 | Symbols: | Ribosomal protein S25 family protein ... 339 1e-92
AT4G34555.1 | Symbols: | Ribosomal protein S25 family protein ... 224 3e-58
> AT2G16360.1 | Symbols: | Ribosomal protein S25 family protein
| chr2:7076713-7077366 REVERSE LENGTH=378
Length=378
Score = 339 bits (183), Expect = 1e-92
Identities = 246/275 (89%), Gaps = 9/275 (3%)
Strand=Plus/Plus
Query 24 TGGTTTCTCTCG-CTGATTCCAGGCACCAAAGAAGGATAAAGTTCCACCAACATCTTCTA 82
|||||||||| | |||||||||||||||||||||||| ||||| |||||| |||| ||||
Sbjct 38 TGGTTTCTCT-GACTGATTCCAGGCACCAAAGAAGGACAAAGTCCCACCACCATCCTCTA 96
Query 83 AACCAGCTAAATCAGGTGGCGGCAAGCAGAAAAAGAAGCAAAGGAAAGCAAAAGGAGAAA 142
|||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 97 AACCCGCCAAATCCGGTGGCGGAAAGCAGAAAAAGAAGCAAAGGAAAGCAAAAGGAGAAG 156
Query 143 GTGAACAATATGGTTCTGTTTGACCAAGCAACTTATGACAAGCTTATGTCTGAAGCTCCC 202
|||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 157 GTGAACAACATGGTTCTGTTCGATCAAGCAACTTACGACAAGCTTATGTCTGAAGCTCCT 216
Query 203 AAGTTTAAATTGATCACTCCTTCTATTCTCTCTGAC-G-----G-ATCAATGGGTCGCTT 255
||||| ||||||||||||||||| |||||||||||| | | |||||||||||||||
Sbjct 217 AAGTTCAAATTGATCACTCCTTCGATTCTCTCTGACCGTCTTCGGATCAATGGGTCGCTT 276
Query 256 GCAAGGAAGGCGATAAGAGATCTGATGGCGAAAGG 290
|| || ||||||||||||||| |||||| ||||||
Sbjct 277 GCTAGAAAGGCGATAAGAGATTTGATGGTGAAAGG 311
> AT4G34555.1 | Symbols: | Ribosomal protein S25 family protein
| chr4:16504230-16505472 REVERSE LENGTH=611
Length=611
Score = 224 bits (121), Expect = 3e-58
Identities = 226/273 (83%), Gaps = 22/273 (8%)
Strand=Plus/Plus
Query 38 GATTCCA-GGCACCAAAGAAGGATAAAGTTCCACCAACATCTTCTAAACCAGCTAAATCA 96
||||| | |||||| ||||| || |||||||| || | || |||||||| || |||||
Sbjct 128 GATTCAATGGCACCCAAGAAAGACAAAGTTCCTCCTCCGTCCTCTAAACCCGCCAAATCC 187
Query 97 GGTGGCGGCAAGC---AGAAAAAG-A----AGCAAAGGAAAGCAAAAGGAGAAAGTGAAC 148
||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 188 GGTGGCGGCAAGCAAAAGAAAAAGAAGTGGAGCAAAGGAAAGCAAAAGGAGAAAGTGAAC 247
Query 149 AATATGGTTCTGTTTGACCAAGCAACTTATGACAAGCTTATGTCTGAAGCTCCCAAGTTT 208
|| |||||| ||||||||||||||||||| ||||||||| | ||||| |||||||||||
Sbjct 248 AACATGGTTTTGTTTGACCAAGCAACTTACGACAAGCTTCTCTCTGAGGCTCCCAAGTTC 307
Query 209 AAA-TTGATCACTCCTTCTATTCTCTCTGAC-G---GA---TCAATGGGTCGCTTGCAAG 260
||| || |||||||||||||| ||||||||| | || ||||||| |||||||| ||
Sbjct 308 AAACTT-ATCACTCCTTCTATCCTCTCTGACCGTTTGAGGATCAATGGATCGCTTGCTAG 366
Query 261 GAAGG-CGATAAGAGA-TCTGATGGCGAAAGGA 291
|||| |||| ||||| | ||||||| || |||
Sbjct 367 -AAGGGCGATCAGAGAAT-TGATGGCTAAGGGA 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13421488983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5