BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931826
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16460.1 | Symbols: | Protein of unknown function (DUF1640)... 1184 0.0
> AT2G16460.1 | Symbols: | Protein of unknown function (DUF1640)
| chr2:7133390-7135652 REVERSE LENGTH=1176
Length=1176
Score = 1184 bits (641), Expect = 0.0
Identities = 702/732 (96%), Gaps = 2/732 (0%)
Strand=Plus/Plus
Query 2 TTCTTTCAATTTCTGATCGATGACATTGTCCAAGCGATTGGCTCTATTGGGAGCTCAATC 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 TTCTTTCAATTTCTGATCGATGACATTGTCCAAGCGATTGGCTCTATTGGGAGCTCAATC 210
Query 62 TGCGATTACTCTCGCTAAACCTCGAGTTCTCGGTTCCTCTCTCGGATTGCTTAATCGTCG 121
|||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||
Sbjct 211 TGCGATTACTCTCGCTAAACCTCGAGGTCTCGGTTCCTCTCTCGGGTTACTTGATCGTCG 270
Query 122 TCAATTTCCGTACCGTCAATATTCTGAACTCACGAAAGCTAATGGAAGACGTGCCTTTCT 181
|| ||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||||
Sbjct 271 TCCATTTCCGTATCGTCAATTTTCTGAGCTCACGAAAGCTAATGGGAGACGTGCTTTTCT 330
Query 182 CGTTGATACATTGGCTCTGGTGAGGAGTCTTGAAGCTCAAGGTGTTCCATCGAAACAAGC 241
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 331 CGTTGATACATTGGCTCTGGTGAGGAGTCTTGAAGCTCAAGGAGTTCCATCGAAACAAGC 390
Query 242 TGAGGCAATAACTTCTGCCATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTGA 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TGAGGCAATAACTTCTGCTATTACTGAGGTTTTGAATGATAGCTTGGAAAATGTCTCTGA 450
Query 302 GTCTTTTGTGTCAAAAGCAGAAATGCAGAAGATTGAAATGATTCAAGATTCAAATTTGTC 361
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 451 GTCTTTTGTGTCGAAAGCGGAAATGCAGAAGATTGAAATGATTCAAGATTCAAATTTATC 510
Query 362 AAAATTTAAATCTGAAGTAAAAAGTTCTCAGGAGCATCACTTTACTGTATTGCAACGTGA 421
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 511 GAAATTTAAATCTGAAGTCAAAAGTTCTCAGGAGCATCATTTTACTGTATTGCAACGTGA 570
Query 422 GACAGAAAAACTGAGAGGCGATATAGAGAAGATGCGAAGTGAGCTGAGGTACGAAATTGA 481
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 GACTGAAAAATTGAGAGGCGATATAGAGAAGATGCGAAGTGAGCTAAGGTACGAAATTGA 630
Query 482 TAAGGTCACAGCTGGACAACGCTTGGATTTGAATCTTGAAAGAGGTCGAATACGCGATGA 541
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 631 TAAGGTCACAGCGGGACAACGCTTGGATTTGAATCTTGAAAGAGGCCGAATACGTGATGA 690
Query 542 GCTAGCTAATCAGAATACCGAAACAACAAATCTCACAAACAAGCTTGACAGGGAAATTCA 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 691 GCTAGCTAATCAGAATACCGAAACAACAAACCTCACAAACAAGCTTGACAGGGAAATTCA 750
Query 602 TGCGCTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTAC 661
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TGCGTTGAGAGCTCAATTAGAAGCTTCAAAATACGAAGTCATCAAATATTGCATAGGTAC 810
Query 662 ACTTGTGTCGATTTCAGCTGTGGGACTCGCCGTCCTTCGCATCATGATTTA--GTACGAT 719
|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 811 ACTTGTGTCGATTTCAGCAGTGGGACTCGCCGTCCTTCGTATCATGATTTAAAGTACGAT 870
Query 720 CCCAACACTCAA 731
||||||||||||
Sbjct 871 CCCAACACTCAA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5