BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931834
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein ... 215 1e-55
> AT1G69580.2 | Symbols: | Homeodomain-like superfamily protein
| chr1:26171943-26173612 FORWARD LENGTH=1198
Length=1198
Score = 215 bits (116), Expect = 1e-55
Identities = 183/214 (86%), Gaps = 9/214 (4%)
Strand=Plus/Plus
Query 1 AGTATTTACAATCTGTTTTAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCCA 60
||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 699 AGTATCTACAGTCCGTTTTAATGAAAGCTCAACAAACTCTCGCTGGCTACTCATCTTCAA 758
Query 61 CTCTCCGCATGGACTTAGCAAGAACGGAGCTCTCCAGATTAGCTTTAATGTTGAACAGAG 120
|||| ||||||| || || || || |||||||| |||||||||| |||| |||||||||
Sbjct 759 ATCTCGGCATGGATTTTGCGAGGACCGAGCTCTCTAGATTAGCTTCAATGGTGAACAGAG 818
Query 121 GCTGTCCAAGTTCTTCATACTCTGAGCTAACACAAGTGGAAAGAGAGGATGAAGCAGAAG 180
|||||||||| |||| | ||| |||||||| ||||| ||| || || | |||| | | |
Sbjct 819 GCTGTCCAAGCACTTCGTTCTCAGAGCTAACGCAAGTAGAA-GA-AGAA-GAAG-A-A-G 872
Query 181 CAGGTTTCTTGTGGTACAAGAAACCAGAAAACAG 214
| ||||||||||||||||||||||||||||||
Sbjct 873 --G-TTTCTTGTGGTACAAGAAACCAGAAAACAG 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9550872310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5