BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931852
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19045.1 | Symbols: RALFL13 | RALF-like 13 | chr2:8251674-82... 291 3e-78
AT2G19030.1 | Symbols: RALFL11 | ralf-like 11 | chr2:8247783-82... 291 3e-78
AT2G19040.1 | Symbols: RALFL12 | RALF-like 12 | chr2:8249923-82... 274 3e-73
> AT2G19045.1 | Symbols: RALFL13 | RALF-like 13 | chr2:8251674-8251892
FORWARD LENGTH=219
Length=219
Score = 291 bits (157), Expect = 3e-78
Identities = 193/211 (91%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATATCCGCCGCGGTGACTGCGGAACCAGTA 80
|||||||||||||||||||||||||||||||| | ||| || |||| ||||||||||||
Sbjct 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGAAATACATAGAAGATGGTGTGATTAACAAGTGCGCGGGTCCTAATCCTCCT 140
|| |||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 61 GAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCCT 120
Query 141 CCGGGATGCCATCCTCCTGGGGCCGAAGATAAGAAACCTACTCCCGTTAACGAGTATAGC 200
||||||||| ||||||| ||||||||| | ||||| |||| |||||||||||| ||||||
Sbjct 121 CCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAATCCCGTTAACGAATATAGC 180
Query 201 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 231
|||||||||||||||||||||||||||||||
Sbjct 181 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 211
> AT2G19030.1 | Symbols: RALFL11 | ralf-like 11 | chr2:8247783-8248001
FORWARD LENGTH=219
Length=219
Score = 291 bits (157), Expect = 3e-78
Identities = 193/211 (91%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATATCCGCCGCGGTGACTGCGGAACCAGTA 80
|||||||||||| ||||||||||||||||||| | ||| || |||| ||||||||||||
Sbjct 1 ATGAAGGCATGGCTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGAAATACATAGAAGATGGTGTGATTAACAAGTGCGCGGGTCCTAATCCTCCT 140
|| |||||||| ||||||||| |||||| |||||||||||| || |||||||||||||||
Sbjct 61 GAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCCT 120
Query 141 CCGGGATGCCATCCTCCTGGGGCCGAAGATAAGAAACCTACTCCCGTTAACGAGTATAGC 200
||||||||| ||||||| ||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 121 CCGGGATGCAATCCTCCCGGGGCCGAACAAAAGAACCCTACTCCCGTTAACGAGTATAGC 180
Query 201 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 231
|||||||||||||||||||||||||||||||
Sbjct 181 CGTGGCTGCAGCAAAATTCATCGGTGCAGGC 211
> AT2G19040.1 | Symbols: RALFL12 | RALF-like 12 | chr2:8249923-8250141
FORWARD LENGTH=219
Length=219
Score = 274 bits (148), Expect = 3e-73
Identities = 191/212 (90%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATATCCGCCGCGGTGACTGCGGAACCAGTA 80
|||||||||||||||||| ||||||||||||| | ||||| ||||| ||||||||||||
Sbjct 1 ATGAAGGCATGGGTGATAGGTTTGCTAGTGATCTGCGCCGTGGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGAAATACATAGAAGATGGTGTGATTAACAAGTGCGCGGGTCCTAATCCTCCT 140
|| |||||||| ||||||||| |||||| |||||||||||| || |||||||||||||||
Sbjct 61 GAGAGTCGGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCCT 120
Query 141 CCGGGATGCCATCCTCCTGGGGCCGAAGATAAGAAA-CCTACTCCCGTTAACGAGTATAG 199
|| |||||| ||||||| ||| | ||| | || ||| |||||||||||||||||||||||
Sbjct 121 CCAGGATGCAATCCTCCCGGGACTGAACA-AAAAAACCCTACTCCCGTTAACGAGTATAG 179
Query 200 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGC 231
||||||||||||||||||||||||||||||||
Sbjct 180 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGC 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12466401752
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5