BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931853
Length=259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19045.1 | Symbols: RALFL13 | RALF-like 13 | chr2:8251674-82... 344 2e-94
AT2G19030.1 | Symbols: RALFL11 | ralf-like 11 | chr2:8247783-82... 339 1e-92
AT2G19040.1 | Symbols: RALFL12 | RALF-like 12 | chr2:8249923-82... 327 2e-89
> AT2G19045.1 | Symbols: RALFL13 | RALF-like 13 | chr2:8251674-8251892
FORWARD LENGTH=219
Length=219
Score = 344 bits (186), Expect = 2e-94
Identities = 210/221 (95%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCCGTGGTGATTGCGGAACCAGTG 80
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGGAA-TACATAGAATATGGTGCGATTAACAAGTGCGCGGGTCCTAATCCTCC 139
|| |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GAGAGTC-GGAATTACATAGAATATGGTGCGATTAACAAGTGCGCTGGTCCTAATCCTCC 119
Query 140 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCC-AACTCCCGTTAACGAGTATA 198
||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 120 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCTAA-TCCCGTTAACGAATATA 178
Query 199 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGACTGA 239
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 GCCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGTGACTGA 219
> AT2G19030.1 | Symbols: RALFL11 | ralf-like 11 | chr2:8247783-8248001
FORWARD LENGTH=219
Length=219
Score = 339 bits (183), Expect = 1e-92
Identities = 208/220 (95%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCCGTGGTGATTGCGGAACCAGTG 80
|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGAAGGCATGGCTGATATGTTTGCTAGTGATTTGCGCGGCAGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGGAA-TACATAGAATATGGTGCGATTAACAAGTGCGCGGGTCCTAATCCTCC 139
|| |||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 GAGAGTC-GGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCC 119
Query 140 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCAACTCCCGTTAACGAGTATAG 199
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 120 TCCGGGATGCAATCCTCCCGGGGCCGAACAAAAGAACCCTACTCCCGTTAACGAGTATAG 179
Query 200 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGACTGA 239
|||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGATTGA 219
> AT2G19040.1 | Symbols: RALFL12 | RALF-like 12 | chr2:8249923-8250141
FORWARD LENGTH=219
Length=219
Score = 327 bits (177), Expect = 2e-89
Identities = 206/220 (94%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 21 ATGAAGGCATGGGTGATATGTTTGCTAGTGATTTGCGCCGTGGTGATTGCGGAACCAGTG 80
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAGGCATGGGTGATAGGTTTGCTAGTGATCTGCGCCGTGGTGATTGCGGAACCAGTG 60
Query 81 GAAAGTCGGGAA-TACATAGAATATGGTGCGATTAACAAGTGCGCGGGTCCTAATCCTCC 139
|| |||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 GAGAGTC-GGAATTACATAGAATATGGTGCGATTAACAAGTGTGCCGGTCCTAATCCTCC 119
Query 140 TCCGGGATGCAATCCTCCCGGGGCCGAACAGAAGAACCCAACTCCCGTTAACGAGTATAG 199
||| |||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||
Sbjct 120 TCCAGGATGCAATCCTCCCGGGACTGAACAAAAAAACCCTACTCCCGTTAACGAGTATAG 179
Query 200 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGACTGA 239
|||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CCGTGGCTGCAGCAAAATTCATCGGTGCAGGCGCGATTGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11812921015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5