BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931858
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18980.1 | Symbols: | Peroxidase superfamily protein | chr2... 1561 0.0
> AT2G18980.1 | Symbols: | Peroxidase superfamily protein | chr2:8233335-8235316
REVERSE LENGTH=1078
Length=1078
Score = 1561 bits (845), Expect = 0.0
Identities = 958/1013 (95%), Gaps = 6/1013 (1%)
Strand=Plus/Plus
Query 1 AAACATTAACTTTCTAAGCCATGAAGTACCAAGGCAGCTTCTCCATTGTTGCTCTTTTTC 60
|||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 3 AAACCTTAACATTCTAAGCCATGAAGAACCAAAGCAGCTTCTCCATTGTTGCTCTTCTTC 62
Query 61 TCATTCTCTTTTCTTCATCTGTCTTTGCTCAGCTACAGACAAATTTTTACCGGAAGTCAT 120
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 63 TCATTTTCTTTTCCTCATCTGTCTTTGCTCAGCTGCAGACAAATTTTTACCGGAAGTCAT 122
Query 121 GTCCTAACGTCGAAACTATTGTCCGCAACCCCGTCCGCCAAAAGTTCCAACAGACTTTTG 180
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 123 GTCCTAACGTGGAAACTATTGTCCGCAATGCCGTCCGCCAAAAGTTCCAGCAGACTTTTG 182
Query 181 TTACGGCTCCAGCCATCCTCCGCCTTTTCTTCCATGATTGCTTCGTCCGTGGTTGTGATG 240
|||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 TTACGGCTCCGGCCACCCTCCGCCTTTTCTTCCATGATTGCTTCGTCCGTGGATGTGATG 242
Query 241 CTTCGATATTGCTGGCGTCTCCATCGGAGAAAGATCACCCTGATGACAAGTCACTAGCCG 300
|||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 243 CTTCGATATTGCTGGCATCACCATCTGAGAAGGATCACCCTGATGACAAGTCACTAGCCG 302
Query 301 GAGACGGGTTTGATACGGTGGCAAAGGCAAAGCAGGCCGTTGATAGGGATCCCAACTGCC 360
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 303 GAGACGGGTTTGATACGGTGGCAAAGGCAAAGCAGGCCCTTGATAGGGACCCCAACTGCC 362
Query 361 GTAACAAAGTCTCATGCGCTGACATTTTGGCTCTAGCCACTCGTGACGTCGTCGTTTTGA 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 363 GTAACAAAGTCTCATGCGCTGACATTTTGGCTCTCGCCACTCGTGACGTCGTCGTTTTGA 422
Query 421 CTGGCGGACCGAACTATCCGGTAGAGCTAGGGAGGAGAGACGGCAGACTATCCACGA-TA 479
| || ||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 423 CCGGAGGACCGAACTATCCGGTAGAGCTAGGGAGGAGAGACGGCAGACTATCGAC-AGTG 481
Query 480 GCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATTGGACCAACTTAACACTATG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATTGGACCAACTTAACACTATG 541
Query 540 TTCGCTCGTCACGGTCTATCCCAAACCGATATGATCGCACTCTCAGGAGCACATACTATC 599
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 TTCGCTCGTCACGGTCTATCCCAAACCGATATGATTGCACTCTCAGGAGCACATACTATA 601
Query 600 GGATTCGCACATTGTGG-AAGGTTTTC-AAAGAGAATTTACAATTTTAGTCCTAAACGCC 657
||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
Sbjct 602 GGATTCGCACATTGTGGCAA-GTTTTCGAAA-AGAATTTACAATTTTAGTCCTAAACGTC 659
Query 658 CGATTGATCCGACTTTAAATACTCAATACGCGTTACAGTTGAGACAAATGTGTCCCATTC 717
| |||||||||||||| |||| || ||||| ||||| |||||||||||||| |||||||
Sbjct 660 CAATTGATCCGACTTTGAATATTCGTTACGCCTTACAATTGAGACAAATGTGCCCCATTC 719
Query 718 GGGTTGACCCGAGGATCGCGATTAATATGGATCCTACTTCTCCAAATACCTTTGACAATG 777
|||| ||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 720 GGGTCGACTTGAGGATCGCAATTAACATGGATCCTACTTCTCCAAATACATTTGACAATG 779
Query 778 CTTATTTCAAAAACCTCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTATTTCAAAAACCTCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCT 839
Query 838 CTGATCAACGGTCTAGATCAACTGTCAATTCATTTGCTTCTAATGAAGCAACTTTTAGAC 897
||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 CTGATGAACGATCTAGATCAACTGTCAATTCATTTGCTTCTAGTGAAGCAACTTTTAGAC 899
Query 898 AAGCTTTTATTTTGGCTATAACGAAGTTGGGTCGGGTTGGAGTCAAAACCGGTAACGCCG 957
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 900 AAGCTTTTATTTCGGCTATAACGAAGTTGGGTCGGGTTGGAGTTAAAACCGGTAACGCGG 959
Query 958 GTGAGATAAGACGGGATTGTTCACGTGTTAATTAGTGATTTGTTGTTTCTTTT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGAGATAAGACGGGATTGTTCACGTGTTAATTAGTGATTTGTTGTTTCTTTT 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5