BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931863

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) ...  58.4    7e-08


> AT3G25080.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:9136631-9138052 FORWARD LENGTH=976
Length=976

 Score = 58.4 bits (31),  Expect = 7e-08
 Identities = 52/61 (85%), Gaps = 6/61 (10%)
 Strand=Plus/Plus

Query  375  ATGCAATTTTCTACATTAGGTACAAGGACCCTTGCA--AGGCTCGGGCT-GGTGATGATG  431
            |||||||||||||||||||||||||||||  ||| |  |||||||| || ||| ||| ||
Sbjct  662  ATGCAATTTTCTACATTAGGTACAAGGAC--TTGTACGAGGCTCGG-CTTGGTAATGCTG  718

Query  432  T  432
            |
Sbjct  719  T  719



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5