BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931867

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18910.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   717    0.0  


> AT2G18910.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr2:8192708-8194338 REVERSE LENGTH=911
Length=911

 Score =  717 bits (388),  Expect = 0.0
 Identities = 420/436 (96%), Gaps = 0/436 (0%)
 Strand=Plus/Plus

Query  1    TCTCTCAATCTCTCACTTTCAAGATGCCGATCAACAAAGACCCATCAACACCTCCTCCTG  60
            ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  TCTCTCAATTTAACACTTTCAAGATGCCGATCAACAAAGACCCATCAACACCTCCTCCTG  244

Query  61   TTATCGGAAAAATCGGTCCTTACACTGTCTTTATGACTCCTCCAGCAAATCCTAAACCAC  120
            ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct  245  TTATCGGAAAAATCGGTCCTTACACTGTCTTTATGACTCCTCCTGCGACTCCTAAACCAC  304

Query  121  CTGAATCTCCCTCCGCCGTCTCTCAGAAGCCTGTGATGGCACCACCGGTTCTTCCTCCGC  180
            |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  305  CTGAATCTCCCTCCGCTGTGTCTCAGAAGCCTGTGATGGCACCACCGGTTCTTCCTCCGC  364

Query  181  CGCAGCAGTTTAAGTCGGTGGCTTCCTCTGAACAAGACGGCTCAGTTTTGGGGTTCTTTA  240
            ||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct  365  CGCAGCAGTTTAAATCGGTGGCTTCTTCTGACCAGGACGGCTCAGTTTTGGGGTTCTTTA  424

Query  241  AAAACGCCGTCACAAAGGTTCAAAATGCACATTCAAGTGTGGATGATCATTTGGTGAGAT  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  425  AAAACGCCGTCACAAAGGTTCAAAATGCACATTCAAGTGTGGATGATCATTTGGTGAGGT  484

Query  301  GGTTTGGGTTAAACCAATCAAAGTATCAGTGGGCTTTGGATGAGTACTACGAAACCAAAG  360
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  485  GGTTTGGGTTAAACCAATCTAAGTATCAGTGGGCTTTGGATGAGTACTACGAAAGCAAAG  544

Query  361  AATCAGATATGAAGACCGTGAAAGCAAAGGAGATGCCGGGGAAAGTACAGAGTGTATAAG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  AATCAGATATGAAGACCGTGAAAGCAAAGGAGATGCCGGGGAAAGTACAGAGTGTATAAG  604

Query  421  CAACCATATATAAACT  436
            ||||||| ||||||||
Sbjct  605  CAACCATGTATAAACT  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5