BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931869
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18890.1 | Symbols: | Protein kinase superfamily protein | ... 2049 0.0
> AT2G18890.1 | Symbols: | Protein kinase superfamily protein
| chr2:8183890-8186796 FORWARD LENGTH=1427
Length=1427
Score = 2049 bits (1109), Expect = 0.0
Identities = 1189/1228 (97%), Gaps = 3/1228 (0%)
Strand=Plus/Plus
Query 3 CTTCTTCTTCTGTTCCATT-CaaaaaaaTGAAGTACATTCGTAGCAACAGCTTGAAACGT 61
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 111 CTTCTTCTTCTGTTCCATTCCAAAAGAATGAAGTACATTCGAAGCAACAGCTTGAAACGT 170
Query 62 CTCTTCTCCTTTAAACGACGCAGTTTCGACTCCGACTCTTCAGAAAACTCAACTCCTCAC 121
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 171 CTCTTCTCCTTCAAACGACGCAGTTTCGACTCCGACTCCTCAGAAAACTCTTCTCCTCTC 230
Query 122 ACTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGAGCAGTTTCAAAGACCC 181
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 231 GCTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGACCAGTTTCAAAGACCC 290
Query 182 AAATGGAAATGTTTCTCCTTTGAAGAAATCTACT-ACGCAACCAACGGTTTCAGCTCAGA 240
||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||||||
Sbjct 291 AAATGGAAATGTTTCTCCTTTCAAGAAATCTA-TGACGCAACCAACGGTTTTAGCTCAGA 349
Query 241 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGAATATTGAGTAAAAATgg 300
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 350 GAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGGATATTGGGTAAAAACGG 409
Query 301 agaagaaatagcagtgaagaggataacaagaggaggaagagatgatgagaggagagagaa 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGAAGAGATAGCAGTGAAGAGGATAACAAGAGGAGGAAGAGATGATGAGAGGAGAGAGAA 469
Query 361 agagTTTTTAATGGAGATTGGAACAATTGGACATGTCTCACATCCTAATGTCTTGTCTCT 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 470 AGAGTTTTTAATGGAGATTGGAACAATAGGACATGTCTCACATCCTAATGTCTTGTCTCT 529
Query 421 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTC 589
Query 481 TGTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAA 649
Query 541 GATTGCAATTGGGACAGCAAAAGGTCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 650 GATTGCAATTGGGACAGCAAAAGGGCTTCATTATTTACACAAAGGTTGTCAGAGAAGGAT 709
Query 601 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGAT 769
Query 661 ATCTGATTTTGGATTAGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 720
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATCTGATTTTGGATTGGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCC 829
Query 721 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTAGATGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 830 AATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTGGATGA 889
Query 781 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACC 949
Query 841 TGTTGATGCTTCTCATCAAAGCCTACACAGCTGGGCAAAATTGATAATCAAAGATGGAGA 900
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 950 TGTTGATGCTTCTCACCAAAGCCTACACAGCTGGGCAAAACTGATAATCAAAGATGGAGA 1009
Query 901 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGGAGAATTTGATCTCCAACAACTTCATCG 960
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1010 GATTGAGAAGCTGGTGGATCCGAGGATCGGTGAAGAATTTGATCTGCAACAACTTCATCG 1069
Query 961 CATAGCTTTCGCTGCGTCTCTCTGTATTCGATCTTCGTCTCTATGTCGACCTTCCATGAT 1020
||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1070 CATTGCTTTCGCCGCGTCTCTCTGCATCCGATCTTCTTCTCTATGTCGACCTTCCATGAT 1129
Query 1021 CGAGGTATTAGAAGTACTACaaggagaagatatagagaaagaaaaatggaaaatggaaga 1080
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1130 CGAGGTCTTAGAAGTACTACAAGGAGAAGATATAGAGAAAGAGAAATGGAAAATGGAAGA 1189
Query 1081 ggaagaagaagtgaaagaagagTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1140
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GGAAGAAGAAGTTAAAGAAGAGTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGA 1249
Query 1141 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATCGAAGCTCTTCGCATCGTAG 1200
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1250 TTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATAGAAGTTCTTCGCATCGTAG 1309
Query 1201 TCGCTAGATCTAAATTTAGTTGTAAAAT 1228
||||||||||||||||||||||||||||
Sbjct 1310 TCGCTAGATCTAAATTTAGTTGTAAAAT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5