BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931870 Length=1738 Score E Sequences producing significant alignments: (Bits) Value AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8... 1574 0.0 > AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8172189-8178995 FORWARD LENGTH=2108 Length=2108 Score = 1574 bits (852), Expect = 0.0 Identities = 1146/1285 (89%), Gaps = 32/1285 (2%) Strand=Plus/Plus Query 1 GCTCTCTACTAGTCTCTTTCATGGCGTCTTCTCATAAAGGAGCTGCAGGTGACTCAATGG 60 ||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 292 GCTCTCTACTACTTTCTTTCATGGCTTCTTTTCATAAAGGAGCTGCAGGTGACTCAATGG 351 Query 61 GAAGCAGTAAAATGAGTTTTGATCAAAAG-AGACAGCTTGTCTGGAAGCTGTCGAAAGAA 119 |||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||| Sbjct 352 GAAGCAGTAAAATGAGTTTTGATC-AAAGAAGACAACTTGTCTTGAAGCTGTCGAAAGAA 410 Query 120 TCCGAGAGAGCCTTCAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 179 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TCCGAGAGAGAATTTAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 470 Query 180 TTACGTGCAGAATCAGGGAAATATATAAAATACACCGGTTTAACGAAAGAAGAGATCATC 239 ||||||||||||||| |||| ||||||| ||||||||||| |||||||| ||||||||| Sbjct 471 TTACGTGCAGAATCAAAGAAAGATATAAAGTACACCGGTTTGACGAAAGATGAGATCATC 530 Query 240 ATAAGGCTTTTCAACATTGTATCAAAGAAAAACACTGGAGGTTATGAGGTAGAAGAAGAG 299 | |||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||| Sbjct 531 ACAAGGCTTTTCAACATTGTATCAAAGAAAAACACTAGAGATCATGAGGT---AGAAGAG 587 Query 300 AGAAATCCATCACCAAAAAGACAGAGGAAAGATCTTGATCCTTTGCACTATGTGACTCCG 359 | || |||||||||||||||||||| ||||| || | || ||||||||| Sbjct 588 ATAATTCCATCACCAAAAAGACAGA--AAAGA----GA-----T---CT-TGTGACTCCA 632 Query 360 TTAGCTAAAGCTAAAGGCAAGGGTACAATGTATTGTCAGAACTTGGCTTGCCAGGCTAAA 419 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 633 TTAGCTAAAGCTAAAGGCAAGGGTAAAATGTATTGTCAGAACTTGGCTTGCCAGAATAAA 692 Query 420 CTAAGAGAGGAAGCCACTTTTTGCCAAAGGTG-TACCTGTTGTATCTGCTATAAGTATGA 478 |||||||||||||||||||||||| ||||||| | | ||||||||||||| ||||||||| Sbjct 693 CTAAGAGAGGAAGCCACTTTTTGCAAAAGGTGCT-CTTGTTGTATCTGCTTTAAGTATGA 751 Query 479 TAACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATCCTCCATTGGACGGTGA 538 | ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| Sbjct 752 TGACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATTCTCAATTCGACGGTGA 811 Query 539 ATCTTGTGGCTTATCTTGCCACCTGGTTTGCGCTTTCAACAATGAGAATTCGGGTCTGAA 598 ||||||||| ||||||||||| | ||||||||| ||| |||||| ||||||||||| Sbjct 812 ATCTTGTGGATTATCTTGCCATTTAAACTGCGCTTTCGACAGTGAGAAATCGGGTCTGAA 871 Query 599 AGAGGATACGCCGAGTAGTAATATTGATGGATGCTTCAGCTGTGTTTTCTGTGGCAAGGA 658 ||||||||||||||||||| |||||||||||||||||| |||||||| |||||| || | Sbjct 872 AGAGGATACGCCGAGTAGTGATATTGATGGATGCTTCAACTGTGTTTCCTGTGGGAA-AA 930 Query 659 -AAACAGCAAGATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 717 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 CAAATAGCAAAATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 990 Query 718 TAGGTGTGTTTTGTTTCCGCATTCTCATGGCTCATAAGCTTCTCAAGGGAACAAACAAGT 777 |||| |||||||||| |||||||||| |||||||||||||||||||||| ||||| |||| Sbjct 991 TAGGCGTGTTTTGTTACCGCATTCTCTTGGCTCATAAGCTTCTCAAGGGCACAAAGAAGT 1050 Query 778 ACACACTAGTATCTAAAGAGGTGGAGGAAGCTGTGAAGCATCT-AGAAACTGAATTCGGT 836 ||| | |||||||| ||||||||||| ||||||||| |||||| | ||| |||||| ||| Sbjct 1051 ACATAATAGTATCTGAAGAGGTGGAGAAAGCTGTGATGCATCTGAAAAA-TGAATTTGGT 1109 Query 837 GTTCCTATTACTGGTCTTCCATCGGAGTTGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 896 ||||| ||| || ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1110 GTTCCCATTTCTTGTCTTCCATCGAAGATGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 1169 Query 897 GC-GAAAAAAGTCAAGGGACATTGCTCTTCTGCTCTGAAAGAGCTTGATAGTCTTCCACT 955 || || ||| |||||| |||||||||||||||| |||||||||||||| |||||||||| Sbjct 1170 GCTGAGAAA-GTCAAGAAACATTGCTCTTCTGCTTTGAAAGAGCTTGATGGTCTTCCACT 1228 Query 956 GCCTTCTACTATTCAAGGATCATTGAAGATCAAAATTGAGTCTGTTCTAGCAACTTCTGT 1015 |||||||||||| ||||||||| ||||||||| |||||||||||| || ||||||||||| Sbjct 1229 GCCTTCTACTATCCAAGGATCAATGAAGATCAGAATTGAGTCTGTACTTGCAACTTCTGT 1288 Query 1016 AACTTTC-ATTATGGATGTCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGGA 1074 |||||| || || || | ||||||||||||||||||||||||||||||||||||||| | Sbjct 1289 GACTTTCGAT-ATTGAAGCCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGCA 1347 Query 1075 TGTTCCATCGAAAGGCCACAGAGAGATATTACTCGGAGCATTTGACTCGTGAGTTGTTCA 1134 || | |||| |||| | |||||| | ||| ||| || ||||||||||||||||||||| Sbjct 1348 TGGTGTATCGTAAGGTCTCAGAGAAACATTCCTCAAAGGATTTGACTCGTGAGTTGTTCA 1407 Query 1135 GTGTAACAAGTTACCCAAGGTTTA-ATGTCTTGGAACTAACTCCAGCTACAGAGTATTGC 1193 || | ||||| ||| |||||||| | ||| ||||||| |||||||||||||||||||| Sbjct 1408 GTACATCAAGTCACCAAAGGTTTACA-GTCATGGAACTTACTCCAGCTACAGAGTATTGG 1466 Query 1194 TTCAAGATTGTTTCCTTTAGCGGCGTCGAAGAAGTGAGCGTAGATGAATTCAGAGTCTCT 1253 ||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1467 TTCAAAATAGTTTCCTTTAGCGGCGTCGAAGAATTGAGCGTAGATGAATTCATAGTCTCT 1526 Query 1254 ACACAAACCCTCCAAGAAGAAGAAG 1278 ||| ||||||||||||| ||||||| Sbjct 1527 ACAAAAACCCTCCAAGACGAAGAAG 1551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85943333040 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5