BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931870
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8... 1574 0.0
> AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8172189-8178995
FORWARD LENGTH=2108
Length=2108
Score = 1574 bits (852), Expect = 0.0
Identities = 1146/1285 (89%), Gaps = 32/1285 (2%)
Strand=Plus/Plus
Query 1 GCTCTCTACTAGTCTCTTTCATGGCGTCTTCTCATAAAGGAGCTGCAGGTGACTCAATGG 60
||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 292 GCTCTCTACTACTTTCTTTCATGGCTTCTTTTCATAAAGGAGCTGCAGGTGACTCAATGG 351
Query 61 GAAGCAGTAAAATGAGTTTTGATCAAAAG-AGACAGCTTGTCTGGAAGCTGTCGAAAGAA 119
|||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||
Sbjct 352 GAAGCAGTAAAATGAGTTTTGATC-AAAGAAGACAACTTGTCTTGAAGCTGTCGAAAGAA 410
Query 120 TCCGAGAGAGCCTTCAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 179
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCCGAGAGAGAATTTAAAGAAGTCTTGAAGGACTGGAGCTGCAACGAGATTCGAGAGCTC 470
Query 180 TTACGTGCAGAATCAGGGAAATATATAAAATACACCGGTTTAACGAAAGAAGAGATCATC 239
||||||||||||||| |||| ||||||| ||||||||||| |||||||| |||||||||
Sbjct 471 TTACGTGCAGAATCAAAGAAAGATATAAAGTACACCGGTTTGACGAAAGATGAGATCATC 530
Query 240 ATAAGGCTTTTCAACATTGTATCAAAGAAAAACACTGGAGGTTATGAGGTAGAAGAAGAG 299
| |||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||
Sbjct 531 ACAAGGCTTTTCAACATTGTATCAAAGAAAAACACTAGAGATCATGAGGT---AGAAGAG 587
Query 300 AGAAATCCATCACCAAAAAGACAGAGGAAAGATCTTGATCCTTTGCACTATGTGACTCCG 359
| || |||||||||||||||||||| ||||| || | || |||||||||
Sbjct 588 ATAATTCCATCACCAAAAAGACAGA--AAAGA----GA-----T---CT-TGTGACTCCA 632
Query 360 TTAGCTAAAGCTAAAGGCAAGGGTACAATGTATTGTCAGAACTTGGCTTGCCAGGCTAAA 419
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 633 TTAGCTAAAGCTAAAGGCAAGGGTAAAATGTATTGTCAGAACTTGGCTTGCCAGAATAAA 692
Query 420 CTAAGAGAGGAAGCCACTTTTTGCCAAAGGTG-TACCTGTTGTATCTGCTATAAGTATGA 478
|||||||||||||||||||||||| ||||||| | | ||||||||||||| |||||||||
Sbjct 693 CTAAGAGAGGAAGCCACTTTTTGCAAAAGGTGCT-CTTGTTGTATCTGCTTTAAGTATGA 751
Query 479 TAACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATCCTCCATTGGACGGTGA 538
| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 752 TGACAATAAAGATCCTAGTCTCTGGTTAACCTGCAATTCAGATTCTCAATTCGACGGTGA 811
Query 539 ATCTTGTGGCTTATCTTGCCACCTGGTTTGCGCTTTCAACAATGAGAATTCGGGTCTGAA 598
||||||||| ||||||||||| | ||||||||| ||| |||||| |||||||||||
Sbjct 812 ATCTTGTGGATTATCTTGCCATTTAAACTGCGCTTTCGACAGTGAGAAATCGGGTCTGAA 871
Query 599 AGAGGATACGCCGAGTAGTAATATTGATGGATGCTTCAGCTGTGTTTTCTGTGGCAAGGA 658
||||||||||||||||||| |||||||||||||||||| |||||||| |||||| || |
Sbjct 872 AGAGGATACGCCGAGTAGTGATATTGATGGATGCTTCAACTGTGTTTCCTGTGGGAA-AA 930
Query 659 -AAACAGCAAGATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 717
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CAAATAGCAAAATAGAATGTTTGAAGAAGCAACTGATCATTGCAAATGAAGAAAGAAGAG 990
Query 718 TAGGTGTGTTTTGTTTCCGCATTCTCATGGCTCATAAGCTTCTCAAGGGAACAAACAAGT 777
|||| |||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 991 TAGGCGTGTTTTGTTACCGCATTCTCTTGGCTCATAAGCTTCTCAAGGGCACAAAGAAGT 1050
Query 778 ACACACTAGTATCTAAAGAGGTGGAGGAAGCTGTGAAGCATCT-AGAAACTGAATTCGGT 836
||| | |||||||| ||||||||||| ||||||||| |||||| | ||| |||||| |||
Sbjct 1051 ACATAATAGTATCTGAAGAGGTGGAGAAAGCTGTGATGCATCTGAAAAA-TGAATTTGGT 1109
Query 837 GTTCCTATTACTGGTCTTCCATCGGAGTTGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 896
||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1110 GTTCCCATTTCTTGTCTTCCATCGAAGATGAGTAGAGGGCTCGTTAACAGACTTTGCTGC 1169
Query 897 GC-GAAAAAAGTCAAGGGACATTGCTCTTCTGCTCTGAAAGAGCTTGATAGTCTTCCACT 955
|| || ||| |||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1170 GCTGAGAAA-GTCAAGAAACATTGCTCTTCTGCTTTGAAAGAGCTTGATGGTCTTCCACT 1228
Query 956 GCCTTCTACTATTCAAGGATCATTGAAGATCAAAATTGAGTCTGTTCTAGCAACTTCTGT 1015
|||||||||||| ||||||||| ||||||||| |||||||||||| || |||||||||||
Sbjct 1229 GCCTTCTACTATCCAAGGATCAATGAAGATCAGAATTGAGTCTGTACTTGCAACTTCTGT 1288
Query 1016 AACTTTC-ATTATGGATGTCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGGA 1074
|||||| || || || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1289 GACTTTCGAT-ATTGAAGCCGAAGAATCTTTCTCATGGGGAGATACCAATCATTACCGCA 1347
Query 1075 TGTTCCATCGAAAGGCCACAGAGAGATATTACTCGGAGCATTTGACTCGTGAGTTGTTCA 1134
|| | |||| |||| | |||||| | ||| ||| || |||||||||||||||||||||
Sbjct 1348 TGGTGTATCGTAAGGTCTCAGAGAAACATTCCTCAAAGGATTTGACTCGTGAGTTGTTCA 1407
Query 1135 GTGTAACAAGTTACCCAAGGTTTA-ATGTCTTGGAACTAACTCCAGCTACAGAGTATTGC 1193
|| | ||||| ||| |||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 1408 GTACATCAAGTCACCAAAGGTTTACA-GTCATGGAACTTACTCCAGCTACAGAGTATTGG 1466
Query 1194 TTCAAGATTGTTTCCTTTAGCGGCGTCGAAGAAGTGAGCGTAGATGAATTCAGAGTCTCT 1253
||||| || |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1467 TTCAAAATAGTTTCCTTTAGCGGCGTCGAAGAATTGAGCGTAGATGAATTCATAGTCTCT 1526
Query 1254 ACACAAACCCTCCAAGAAGAAGAAG 1278
||| ||||||||||||| |||||||
Sbjct 1527 ACAAAAACCCTCCAAGACGAAGAAG 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5