BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931876

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33145.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   270    4e-72


> AT4G33145.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other 
Eukaryotes - 2996 (source: NCBI BLink). | chr4:15984643-15985064 
REVERSE LENGTH=422
Length=422

 Score =  270 bits (146),  Expect = 4e-72
 Identities = 198/222 (89%), Gaps = 7/222 (3%)
 Strand=Plus/Plus

Query  4    TCAAGAGTTGAAACGTAAAAATGGACAAGAAAGATGTTAGCGCAAAAGCTAGTTCGGTAG  63
            ||||||||| |||||| ||||||||||||  | |||| ||||||||||||||||||||||
Sbjct  108  TCAAGAGTTAAAACGT-AAAATGGACAAG--A-ATGTCAGCGCAAAAGCTAGTTCGGTAG  163

Query  64   CTCAGAGCAGCAGTACCCCAAGCAGTGGCACTGCTCCTGGTCCTGGGAATATGGTTGCGC  123
            ||||||||||| ||    ||||||||||||||||||||||| | || |||||||||||||
Sbjct  164  CTCAGAGCAGCGGT---TCAAGCAGTGGCACTGCTCCTGGTGCAGGCAATATGGTTGCGC  220

Query  124  CCGGTTCTGGTGGTTCTACTCATATCCCTAGAGATGCTTTTGAGGCCAACTCTAAGGCTT  183
            |||||||||| |||||| | || |||||||||| ||||||||||||||||||||||||||
Sbjct  221  CCGGTTCTGGAGGTTCTGCGCAGATCCCTAGAGCTGCTTTTGAGGCCAACTCTAAGGCTT  280

Query  184  ACTTTGACAATCTCCATGCCAAAGTCAAGGCAAATAAGTGAA  225
            | ||||||||||| |||||||| |  ||||||||||||||||
Sbjct  281  ATTTTGACAATCTTCATGCCAAGGAGAAGGCAAATAAGTGAA  322



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11058904780


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5