BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931887

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   501    1e-141


> AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr2:8123221-8125004 FORWARD LENGTH=674
Length=674

 Score =  501 bits (271),  Expect = 1e-141
 Identities = 296/308 (96%), Gaps = 2/308 (1%)
 Strand=Plus/Plus

Query  1    GATTACCAGCTCCGGCAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA  60
            |||| ||| || ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   GATTTCCAACTACGTTAGCCATGGCGAGCACCAAAGTTCAAAGGATTATGACCCAACCTA  153

Query  61   TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTGTTTGAGC  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  154  TCAACTTGATTTTTAGGTTTCTTCAAAGTAAAGCTAGGATCCAGATTTGGCTATTTGAGC  213

Query  121  AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTGGTGT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  214  AGAAAGATTTGAGGATTGAAGGAAGAATCACTGGTTTTGACGAATACATGAATCTAGTTT  273

Query  181  TGGATGAGGCCGAAGAAGTGAGCATCAAGAAAAACACCAGGAAACCACTTGGAAGGATTT  240
            |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  274  TGGATGAGGCTGAAGAAGTGAGCATCAAGAAGAACACCAGGAAACCACTTGGAAGGATTT  333

Query  241  TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAA-  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  334  TACTCAAAGGAGACAACATAACTCTGATGATGAACACGGGAAAGTGATGTCTGTCTCAAA  393

Query  300  CAAACTCT  307
            ||| ||||
Sbjct  394  CAA-CTCT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5