BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931896
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20330.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2950 0.0
> AT2G20330.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:8772687-8775614 REVERSE LENGTH=2244
Length=2244
Score = 2950 bits (1597), Expect = 0.0
Identities = 1872/2005 (93%), Gaps = 18/2005 (1%)
Strand=Plus/Plus
Query 1 CTGAGAA-GAAGAGATAAGCTATGGATAAAGAATTGGAAGGTCTTCGAGCTCATTTTCCT 59
||||||| ||||||| |||| ||||| | |||||||||||||| |||||||||||||||
Sbjct 77 CTGAGAAGGAAGAGA-AAGCAATGGAGGACGAATTGGAAGGTCTACGAGCTCATTTTCCT 135
Query 60 GTTTCGTTCGGTAAGACATCGAAAGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 GTTTCGTTCGGTAAGACATCGAAGGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 195
Query 120 CGCCGCACCGATGTAGCCACCGACGCCGGGGTTTCGTCGGATTTCTCCACCAAGAAACTT 179
||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||| |
Sbjct 196 CGCCGCACCGATGTAGCCAACGACGCCGGAGTTTCGTCGGATATCACCACGAAGAAACCT 255
Query 180 GACTCCGGTAAATCTGAATCTGGATTCCCGTCTCTGTCTTCCTCATCTGAAACCTGGCTC 239
|| ||| | | | ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 256 GATTCC-G---A--TAAATCTGGATTCCCGTCTCTATCTTCCTCATCTCAAACCTGGCTC 309
Query 240 CGAAGTGTTCGCGGTCCGAAACGTAACCCTAATAGCTCCAGTCTAGCTCATTCCGATGAT 299
|||||||||||||||||||| ||||||||||| |||||| | | | | | | |||
Sbjct 310 CGAAGTGTTCGCGGTCCGAATCGTAACCCTAACAGCTCC-G-GT-GAT-GTAGCAATG-- 363
Query 300 GATATAGCAATGGGTCCGCCGCCGTCTAAACCGACGCAAGAGGAAGAAGAGGAGGATGAC 359
| | || | | || ||| | ||||||| ||||||||||||||| |||||||||||
Sbjct 364 GGT-CCGCCA-CCG-CCACCGTCATCTAAACGGACGCAAGAGGAAGAGGAGGAGGATGAA 420
Query 360 GGAGTTATGATGGGACCACCTCCGCCACCGAAGGGACTTGGGAATAGTAATGATTCTGAT 419
| |||||||||||||||||| || || || |||||||| ||||| | |||||||||||||
Sbjct 421 GAAGTTATGATGGGACCACCGCCACCGCCTAAGGGACTCGGGAACATTAATGATTCTGAT 480
Query 420 GATGATGAGGACATGATCGGTCCTCCTCCGCCGCCTCGGGCTGCTATAGATTCCGATGAA 479
||||| | ||| |||||||||||||| |||||||||| |||||| |||||| ||||||
Sbjct 481 GATGAGGGGGATATGATCGGTCCTCCGCCGCCGCCTCCTGCTGCTCGAGATTCAGATGAA 540
Query 480 GATTCAGATGACGATGATGCTAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTCAGATGACGATGATGATAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 600
Query 540 AACGAGATTCAACTCAAGGGCCATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 599
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACGAGATTCAGCTTAAGGGACATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 660
Query 600 GGAGCTAGAGTTCTTTCTGGAAGCTATGACTACACTGTGCGTATGTATGATTTTCAAGGG 659
||||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||
Sbjct 661 GGAGCTAGAGTTCTTTCAGGAAGCTATGACTACACTGTGAGAATGTACGATTTCCAAGGG 720
Query 660 ATGAATTCAAGACTTCAGTCTTTTAGACAGATCGAACCATCTGAGGGACACCAAGTTCGC 719
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 721 ATGAATTCGAGACTACAGTCTTTTAGACAGATAGAGCCATCTGAGGGACACCAAGTTCGC 780
Query 720 AGCTTGAGCTGGAGTCCCACTTCTGGTCATTTTCTATGCGTTACTGGCTCTGCACAAGCT 779
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 AGCGTGAGCTGGAGTCCCACTTCTGGTCAATTTCTATGCGTTACTGGCTCTGCACAAGCT 840
Query 780 AAGATTTTTGATCGAGATGGGCTTACTCTTGGTGAGTTTATGAAAGGGGATATGTATATT 839
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 841 AAGATTTTTGATCGAGATGGTCTTACTCTTGGTGAGTTTATGAAAGGAGATATGTATATT 900
Query 840 CGGGATCTGAAGAACACTAAGGGCCATATTTGTGGGTTGACTTGTGGAGAATGGCATCCG 899
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 901 CGTGATCTGAAGAACACTAAGGGACATATTTGTGGGTTGACCTGTGGAGAATGGCATCCG 960
Query 900 AGGACTAAGGAAACGGTTCTGACTTCTTCGGAAGACGGGTCTTTGCGTATTTGGGATGTT 959
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 961 AGGACTAAGGAAACCGTTCTGACTTCGTCGGAAGACGGGTCTTTGCGTATATGGGATGTT 1020
Query 960 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCGAAGCTTGCTAGACCAGGGAGGGTT 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCTAAGCTTGCTAGACCAGGGAGGGTT 1080
Query 1020 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCTGGTGGCGTAGGAGAT 1079
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1081 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCCGGTGGTGTAGGAGAT 1140
Query 1080 GGTTCTATACAGATTTGGAGTCTCAAGCCGGGGTGGGGAAGCCGACCAGATATATACGTT 1139
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 GGATCTATACAGATTTGGAGTCTCAAGCCGGGATGGGGAAGCCGACCAGATATATACGTT 1200
Query 1140 GGGAAGGCCCACACCGATGATATAACCTCTGTAAAGTTTTCTAGCGATGGCAGAATTCTG 1199
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 GGGAAGGCCCACACTGATGATATAACCTCTGTAAAGTTCTCTAGCGATGGCAGAATTCTG 1260
Query 1200 TTGTCGAGGAGTTTTGATGGCTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1259
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTGTCAAGGAGTTTTGATGGTTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1320
Query 1260 CTAAAAGTTTTCGAGGGTCTCCCTAATTATTATCCACAAACCAACGTTGCCTTTAGTCCA 1319
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1321 CTAAAAGTTTTCGAGGGTCTACCTAATTATTATCCTCAAACCAACGTTGCCTTTAGTCCA 1380
Query 1320 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1440
Query 1380 CTATGCTTCTACGATCGCACCAAACTAGAGATTGTTCAAAAAGTCGGAATCTCTCCAACT 1439
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1441 CTATGTTTCTACGATCGCACCAAACTAGAGATAGTTCAAAAAGTCGGAATCTCTCCAACT 1500
Query 1440 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCTGGA 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1501 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCCGGA 1560
Query 1500 GACAAAAGCCAAGGAGAGACTCACATTCTTTACGACCCAACTCAGAGCGAGAGAGGAGCA 1559
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1561 GACAAAAGCCAAGGAGGGACTCACATTCTTTACGACCCAAGTCAGAGCGAGAGAGGCGCA 1620
Query 1560 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1680
Query 1620 GTCATACACAATCCTCATGCACTACCGTTGTTCAGAGACGCACCAAGCCGTAAAAGACAA 1679
|| |||||||||||||||||| |||| ||||||||||||||||||||||||||| || ||
Sbjct 1681 GTAATACACAATCCTCATGCATTACCATTGTTCAGAGACGCACCAAGCCGTAAACGAGAA 1740
Query 1680 AGAGAGAAAGCATTGAAGGATCCTATTAAAGCCCACAAGCCTGAGATTCCCATGACTGGT 1739
||||||||||||||||||||||| || ||| |||||||||||||||| |||||||| |||
Sbjct 1741 AGAGAGAAAGCATTGAAGGATCCAATGAAATCCCACAAGCCTGAGATACCCATGACAGGT 1800
Query 1740 CCTGGTCATGGTGGAAGAGTTGGGACCACTGGTAGTAGCTTATTAACACAATATCTTCTC 1799
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1801 CCTGGTCATGGTGGAAGAGTTGGGACTACTGGTAGTGGCTTATTAACACAATATCTTCTC 1860
Query 1800 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAGGAAGATCCAAGAGAAGCGATATTG 1859
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1861 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAAGAAGATCCAAGAGAAGCAATATTG 1920
Query 1860 AAATACGCAGAGGTTGCTGTTAAAGATCCTAAGTTTATTGCACCCGCTTACTCTCAGACC 1919
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1921 AAATACGCAGAGGTTGCTGTTAAAGATCCAAAGTTTATTGCACCTGCTTACTCTCAGACC 1980
Query 1920 CAGCCTGACACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACCAAAAAA 1979
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1981 CAGCCTAAGACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACTAAAAAA 2040
Query 1980 TAATTAGTCTTGT-CAAATTCAACG 2003
||||||| || | |||||||||||
Sbjct 2041 TAATTAGAGTTTTTCAAATTCAACG 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99246477465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5