BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931896 Length=2003 Score E Sequences producing significant alignments: (Bits) Value AT2G20330.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2950 0.0 > AT2G20330.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8772687-8775614 REVERSE LENGTH=2244 Length=2244 Score = 2950 bits (1597), Expect = 0.0 Identities = 1872/2005 (93%), Gaps = 18/2005 (1%) Strand=Plus/Plus Query 1 CTGAGAA-GAAGAGATAAGCTATGGATAAAGAATTGGAAGGTCTTCGAGCTCATTTTCCT 59 ||||||| ||||||| |||| ||||| | |||||||||||||| ||||||||||||||| Sbjct 77 CTGAGAAGGAAGAGA-AAGCAATGGAGGACGAATTGGAAGGTCTACGAGCTCATTTTCCT 135 Query 60 GTTTCGTTCGGTAAGACATCGAAAGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 119 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 136 GTTTCGTTCGGTAAGACATCGAAGGTTTCGGCGTCAACTGAAGCCATTCACAGCGCAACT 195 Query 120 CGCCGCACCGATGTAGCCACCGACGCCGGGGTTTCGTCGGATTTCTCCACCAAGAAACTT 179 ||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||| | Sbjct 196 CGCCGCACCGATGTAGCCAACGACGCCGGAGTTTCGTCGGATATCACCACGAAGAAACCT 255 Query 180 GACTCCGGTAAATCTGAATCTGGATTCCCGTCTCTGTCTTCCTCATCTGAAACCTGGCTC 239 || ||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 256 GATTCC-G---A--TAAATCTGGATTCCCGTCTCTATCTTCCTCATCTCAAACCTGGCTC 309 Query 240 CGAAGTGTTCGCGGTCCGAAACGTAACCCTAATAGCTCCAGTCTAGCTCATTCCGATGAT 299 |||||||||||||||||||| ||||||||||| |||||| | | | | | | ||| Sbjct 310 CGAAGTGTTCGCGGTCCGAATCGTAACCCTAACAGCTCC-G-GT-GAT-GTAGCAATG-- 363 Query 300 GATATAGCAATGGGTCCGCCGCCGTCTAAACCGACGCAAGAGGAAGAAGAGGAGGATGAC 359 | | || | | || ||| | ||||||| ||||||||||||||| ||||||||||| Sbjct 364 GGT-CCGCCA-CCG-CCACCGTCATCTAAACGGACGCAAGAGGAAGAGGAGGAGGATGAA 420 Query 360 GGAGTTATGATGGGACCACCTCCGCCACCGAAGGGACTTGGGAATAGTAATGATTCTGAT 419 | |||||||||||||||||| || || || |||||||| ||||| | ||||||||||||| Sbjct 421 GAAGTTATGATGGGACCACCGCCACCGCCTAAGGGACTCGGGAACATTAATGATTCTGAT 480 Query 420 GATGATGAGGACATGATCGGTCCTCCTCCGCCGCCTCGGGCTGCTATAGATTCCGATGAA 479 ||||| | ||| |||||||||||||| |||||||||| |||||| |||||| |||||| Sbjct 481 GATGAGGGGGATATGATCGGTCCTCCGCCGCCGCCTCCTGCTGCTCGAGATTCAGATGAA 540 Query 480 GATTCAGATGACGATGATGCTAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 539 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 541 GATTCAGATGACGATGATGATAATGACAACGAGGAGAATCGTTACCAGATTCCATTGAGC 600 Query 540 AACGAGATTCAACTCAAGGGCCATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 599 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 601 AACGAGATTCAGCTTAAGGGACATACAAAGATTGTTTCATCTCTCGCTGTTGATAGTGCT 660 Query 600 GGAGCTAGAGTTCTTTCTGGAAGCTATGACTACACTGTGCGTATGTATGATTTTCAAGGG 659 ||||||||||||||||| ||||||||||||||||||||| | ||||| ||||| |||||| Sbjct 661 GGAGCTAGAGTTCTTTCAGGAAGCTATGACTACACTGTGAGAATGTACGATTTCCAAGGG 720 Query 660 ATGAATTCAAGACTTCAGTCTTTTAGACAGATCGAACCATCTGAGGGACACCAAGTTCGC 719 |||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 721 ATGAATTCGAGACTACAGTCTTTTAGACAGATAGAGCCATCTGAGGGACACCAAGTTCGC 780 Query 720 AGCTTGAGCTGGAGTCCCACTTCTGGTCATTTTCTATGCGTTACTGGCTCTGCACAAGCT 779 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 781 AGCGTGAGCTGGAGTCCCACTTCTGGTCAATTTCTATGCGTTACTGGCTCTGCACAAGCT 840 Query 780 AAGATTTTTGATCGAGATGGGCTTACTCTTGGTGAGTTTATGAAAGGGGATATGTATATT 839 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 841 AAGATTTTTGATCGAGATGGTCTTACTCTTGGTGAGTTTATGAAAGGAGATATGTATATT 900 Query 840 CGGGATCTGAAGAACACTAAGGGCCATATTTGTGGGTTGACTTGTGGAGAATGGCATCCG 899 || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 901 CGTGATCTGAAGAACACTAAGGGACATATTTGTGGGTTGACCTGTGGAGAATGGCATCCG 960 Query 900 AGGACTAAGGAAACGGTTCTGACTTCTTCGGAAGACGGGTCTTTGCGTATTTGGGATGTT 959 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 961 AGGACTAAGGAAACCGTTCTGACTTCGTCGGAAGACGGGTCTTTGCGTATATGGGATGTT 1020 Query 960 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCGAAGCTTGCTAGACCAGGGAGGGTT 1019 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1021 AATAACTTCCTAAGCCAAACGCAGGTTATTAAGCCTAAGCTTGCTAGACCAGGGAGGGTT 1080 Query 1020 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCTGGTGGCGTAGGAGAT 1079 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1081 CCAGTTACAACCTGTGCTTGGGACCGTGACGGAAAGCGTATCGCCGGTGGTGTAGGAGAT 1140 Query 1080 GGTTCTATACAGATTTGGAGTCTCAAGCCGGGGTGGGGAAGCCGACCAGATATATACGTT 1139 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1141 GGATCTATACAGATTTGGAGTCTCAAGCCGGGATGGGGAAGCCGACCAGATATATACGTT 1200 Query 1140 GGGAAGGCCCACACCGATGATATAACCTCTGTAAAGTTTTCTAGCGATGGCAGAATTCTG 1199 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1201 GGGAAGGCCCACACTGATGATATAACCTCTGTAAAGTTCTCTAGCGATGGCAGAATTCTG 1260 Query 1200 TTGTCGAGGAGTTTTGATGGCTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1259 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1261 TTGTCAAGGAGTTTTGATGGTTCTCTGAAGGTCTGGGACTTGCGGCAGATGAAAGAAGCT 1320 Query 1260 CTAAAAGTTTTCGAGGGTCTCCCTAATTATTATCCACAAACCAACGTTGCCTTTAGTCCA 1319 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1321 CTAAAAGTTTTCGAGGGTCTACCTAATTATTATCCTCAAACCAACGTTGCCTTTAGTCCA 1380 Query 1320 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 GACGAACAAATCATCCTGACTGGAACATCCGTCGAGAAAGACAGCACAACAGGAGGCTTG 1440 Query 1380 CTATGCTTCTACGATCGCACCAAACTAGAGATTGTTCAAAAAGTCGGAATCTCTCCAACT 1439 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1441 CTATGTTTCTACGATCGCACCAAACTAGAGATAGTTCAAAAAGTCGGAATCTCTCCAACT 1500 Query 1440 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCTGGA 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1501 TCCAGCGTGGTGCAATGCGCTTGGCACCCGAGGTTGAATCAGATATTTGCAACATCCGGA 1560 Query 1500 GACAAAAGCCAAGGAGAGACTCACATTCTTTACGACCCAACTCAGAGCGAGAGAGGAGCA 1559 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1561 GACAAAAGCCAAGGAGGGACTCACATTCTTTACGACCCAAGTCAGAGCGAGAGAGGCGCA 1620 Query 1560 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 TGCGTCTGTGTTGCACGTGCACCAAGGAAGAAATCTGTAGATGATTACCAACCAGAACCA 1680 Query 1620 GTCATACACAATCCTCATGCACTACCGTTGTTCAGAGACGCACCAAGCCGTAAAAGACAA 1679 || |||||||||||||||||| |||| ||||||||||||||||||||||||||| || || Sbjct 1681 GTAATACACAATCCTCATGCATTACCATTGTTCAGAGACGCACCAAGCCGTAAACGAGAA 1740 Query 1680 AGAGAGAAAGCATTGAAGGATCCTATTAAAGCCCACAAGCCTGAGATTCCCATGACTGGT 1739 ||||||||||||||||||||||| || ||| |||||||||||||||| |||||||| ||| Sbjct 1741 AGAGAGAAAGCATTGAAGGATCCAATGAAATCCCACAAGCCTGAGATACCCATGACAGGT 1800 Query 1740 CCTGGTCATGGTGGAAGAGTTGGGACCACTGGTAGTAGCTTATTAACACAATATCTTCTC 1799 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 1801 CCTGGTCATGGTGGAAGAGTTGGGACTACTGGTAGTGGCTTATTAACACAATATCTTCTC 1860 Query 1800 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAGGAAGATCCAAGAGAAGCGATATTG 1859 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1861 AAGCAAGGTGGGATGATAAAAGAGACGTGGATGGAAGAAGATCCAAGAGAAGCAATATTG 1920 Query 1860 AAATACGCAGAGGTTGCTGTTAAAGATCCTAAGTTTATTGCACCCGCTTACTCTCAGACC 1919 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1921 AAATACGCAGAGGTTGCTGTTAAAGATCCAAAGTTTATTGCACCTGCTTACTCTCAGACC 1980 Query 1920 CAGCCTGACACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACCAAAAAA 1979 |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1981 CAGCCTAAGACCATCTTCGCTAAATCTGATGACGAAGAAGAAGAAGGTGACACTAAAAAA 2040 Query 1980 TAATTAGTCTTGT-CAAATTCAACG 2003 ||||||| || | ||||||||||| Sbjct 2041 TAATTAGAGTTTTTCAAATTCAACG 2065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99246477465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5