BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931897
Length=1480
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20340.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 2414 0.0
> AT2G20340.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr2:8779735-8782772 FORWARD
LENGTH=1824
Length=1824
Score = 2414 bits (1307), Expect = 0.0
Identities = 1418/1472 (96%), Gaps = 6/1472 (0%)
Strand=Plus/Plus
Query 3 GGGAAGGTGTTGAAGCCGATGGACTCAGAGCAATTGAGAGAATACGGACATC-GAATGGT 61
||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 85 GGGAAGGTGTTGAAGCCGATGGACTCAGAGCAATTGAGAGAGTACGGACATCTG-ATGGT 143
Query 62 TGATTTCATTGCCGATTATTACAAAACCATCGAAGATTTCCCTGTTCTTAGCCAAGTTCA 121
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TGATTTCATTGCTGATTACTACAAAACCATCGAAGATTTCCCTGTTCTTAGCCAAGTTCA 203
Query 122 GCCTGGTTATCTTCATAAGCTTTTGCCTGATTCTGCACCAGACCACCCTGAAACTCTGGA 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 204 GCCTGGTTATCTTCATAAGCTTTTGCCTGATTCTGCACCTGACCACCCTGAAACTCTGGA 263
Query 182 CCAAGTTCTTGATGATGTTCGGGCGAAGATATTGCCTGGAGTAACGCATTGGCAAAGCCC 241
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 264 CCAAGTTCTTGATGATGTTCGAGCAAAGATATTGCCTGGAGTAACGCATTGGCAAAGCCC 323
Query 242 GAGTTTCTTTGCTTATTATCCTTCTAACAGCAGTGTTGCTGGCTTCTTGGGTGAGATGTT 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 324 GAGTTTCTTTGCTTATTATCCTTCTAACAGCAGTGTTGCTGGGTTCTTGGGTGAGATGTT 383
Query 302 GAGTGCTGGTCTTGGTATTGTTGGTTTTAGTTGGGTTACTTCTCCAGCTGCTACCGAGCT 361
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 384 GAGTGCTGGTCTTGGCATTGTTGGTTTTAGTTGGGTTACTTCTCCAGCTGCCACAGAGCT 443
Query 362 AGAAATGATTGTTCTTGATTGGCTTGCCAAACTGCTCAACCTACCCGAGCAGTTTATGTC 421
||||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 444 AGAAATGATCGTTCTTGATTGGGTTGCTAAACTTCTCAACCTACCCGAGCAGTTTATGTC 503
Query 422 CAAAGGAAATGGAGGTGGAGTTATACAAGGTTCAGCTAGTGAAGCTGTTCTTGTTGTTCT 481
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 504 CAAAGGAAATGGAGGTGGAGTTATACAAGGGTCAGCTAGTGAAGCTGTTCTTGTTGTTCT 563
Query 482 GATTGCTGCCCGCGACAAGGTTTTAAGAAGCGTTGGCAAAAACTCACTTCAGAAGCTCGT 541
||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 564 GATTGCTGCACGCGACAAGGTTTTAAGAAGCGTTGGCAAAAACGCGCTTGAGAAGCTCGT 623
Query 542 TGTCTACTCCTCTGACCAGACTCATTCAGCTTTACAGAAGGCTTGCCAGATTGCTGGAAT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TGTCTACTCCTCTGACCAGACTCATTCAGCTTTACAGAAGGCTTGCCAGATTGCTGGAAT 683
Query 602 CCATCCAGAGAATTGCAGGGTGCTGAAAACCGATTCTTCTACAAATTATGCTCTGCGTCC 661
|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||
Sbjct 684 CCATCCAGAGAATTGCAGGGTGCTGACAACAGACTCTTCTACAAATTACGCTCTGCGTCC 743
Query 662 AGAATTGCTTCAAGAAGCTGTTTCTCA-GGATCTTGAAGCTGGATTGATTCCTTTCTTCT 720
||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 744 AGAATCGCTTCAAGAAGCTGTTTCT-AGGGATCTTGAAGCTGGATTGATTCCATTCTTCT 802
Query 721 TATGTGCTAATGTTGGAACCACTTCTTCAACCGCAGTTGATCCATTAGCTGCACTGGGAA 780
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 803 TATGTGCTAATGTTGGGACCACTTCTTCAACCGCAGTTGATCCATTAGCTGCACTGGGGA 862
Query 781 AGATAGCTAACAGCAAT-GAGATGTGGTTTCACGTGGATGCAGCGTACGCTGGAAGTGCT 839
|||| ||||| |||||| || || |||||||||||||||||||| || |||||||||||
Sbjct 863 AGATTGCTAATAGCAATGGA-ATTTGGTTTCACGTGGATGCAGCATATGCTGGAAGTGCC 921
Query 840 TGTATATGTCCAGAGTATCGACAATACATTGACGGTGTAGAAACTGCAGACTCTTTTAAC 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 922 TGTATATGTCCAGAGTATCGGCAATACATTGACGGTGTAGAAACTGCAGACTCTTTTAAC 981
Query 900 ATGAATGCTCACAAATGGTTCCTCACTAATTTCGATTGTTCCCTTCTTTGGGTTAAGGAT 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 982 ATGAATGCTCACAAATGGTTCCTCACTAACTTCGATTGTTCCCTTCTTTGGGTAAAGGAT 1041
Query 960 CAAGATTCTCTTAAATTAGCTCTTTCAACAAATCCAGAGTTTCTCAAAAACAAGGCCTCT 1019
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 CAAGATTCTCTTACATTAGCTCTTTCAACAAATCCAGAGTTTCTCAAAAACAAGGCCTCT 1101
Query 1020 CAGGCAAACTTGGTTGTTGATTACAAAGATTGGCAAATCCCTCTCGGACGAAGATTCAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CAGGCAAACTTGGTTGTTGATTACAAAGATTGGCAAATCCCTCTCGGACGAAGATTCAGA 1161
Query 1080 TCATTGAAACTATGGATGGTTTTGAGGCTCTATGGATCTGAGACCTTGAAGAGCTATATA 1139
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCATTGAAACTATGGATGGTTTTAAGGCTCTATGGATCTGAGACCTTGAAGAGCTATATA 1221
Query 1140 AGAAACCATATCAAACTGGCTAAAGAATTCGAACAGCTTGTCTCTCAAGATCCTAACTTC 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1222 AGAAACCATATCAAACTGGCTAAAGAATTCGAACAACTTGTCTCTCAAGATCCTAACTTC 1281
Query 1200 GAGATTGTCACACCTCGGATCTTTTCTCTTGTCTGTTTCCGCCTCGTGCCTGTGAAAAAC 1259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1282 GAGATTGTCACACCTCGGATCTTTGCTCTTGTCTGTTTCCGCCTCGTGCCTGTGAAAGAC 1341
Query 1260 GAAGAAAAGAAGTGTAATAACCGAAACCGTGAACTCCTAGACGCAGTGAACTCTTCAGGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GAAGAAAAGAAGTGTAATAACCGAAACCGTGAACTCCTAGACGCAGTGAACTCTTCAGGG 1401
Query 1320 AAACTCTTCATTTCTCACACTGCTTTGTCGGGGAAAATCGTAATGCGTTGCGCAATAGGA 1379
||||||||||| || ||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 1402 AAACTCTTCATGTCGCACACTGCTTTATCGGGGAAAATCGTACTACGTTGCGCAATAGGA 1461
Query 1380 GCGCCATTGACGGAGGAGAAGCACGTGAAGGAGGCGTGGAAGGTTATTCAGGAAGAAGCA 1439
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1462 GCGCCATTGACGGAGGAGAAGCACGTTAAGGAGGCGTGGAAGATTATTCAGGAAGAAGCA 1521
Query 1440 TCTTACTTGCTTCACAAGTAAATATGATAAAA 1471
||||||||||||||||||||||||||||||||
Sbjct 1522 TCTTACTTGCTTCACAAGTAAATATGATAAAA 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72991592430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5