BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931906
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20410.1 | Symbols: | RNA-binding ASCH domain protein | chr... 1029 0.0
> AT2G20410.1 | Symbols: | RNA-binding ASCH domain protein | chr2:8802344-8804373
FORWARD LENGTH=1324
Length=1324
Score = 1029 bits (557), Expect = 0.0
Identities = 608/633 (96%), Gaps = 2/633 (0%)
Strand=Plus/Plus
Query 1 GATTTTGGAAGAGAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GATTTTGGAAGAAAAAGAGTGATGAGTCGTGGGAATTACAAGAACCCGTGCTTGACCATG 164
Query 61 CATCAGCCATGGGCTTCACTTCTCGTCCATGGAATCAAACGCATCGAAGGCAGATCCTGG 120
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 165 CATCAGCCATGGGCATCACTTCTCGTCCATGGTATCAAACGCATCGAAGGCAGATCCTGG 224
Query 121 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCTAGTAAAGTACCTGATGAAGCT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 225 CCTTCCCCAATTCGAGGCCGTTTATGGATTCATGCTGCAAGTAAAGTACCTGATGAAGCT 284
Query 181 ACTATTAAAGCAATGGAAGAGTTTTACCGAGAAATTTATGCTGTTGATGGCATCACTGAT 240
||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 285 ACTATCAAAGCAATGGAAGAGTTTTACCAACAAATTTATGCTGTTGATGGGATCACTGAT 344
Query 241 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ATTCAATTCCCCCAACATTACCCTGTTTCAAGACTAATTGGATGTGTTGAGGTTGTTGGA 404
Query 301 TGTGTCACCTCCGATGAACTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGTGTCACCTCCGATGAGCTTCAGAACTGGGATGCTTTACCTCAAGGGGTGAGGCTTGAA 464
Query 361 GGACAAACCAATTTTTGTTGGCTATGTGAGCAA-CCACAGAAACTAATTATTCCATTTGA 419
|||||||| || |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 465 GGACAAACTAACTTTTGTTGGCTATGTGAG-AAGCCACAGAAACTGATTATTCCATTTGA 523
Query 420 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAAAATAAGATTTATGTAGCAGCAGCTAG 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 524 GATGCGTGGGTACCAGGGCGTCTATAACTTAGAGAATAAGATTTATGTAGCAGCAGCTAG 583
Query 480 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCAGACCCAAAAGA 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 584 AGGTCTTATGCCTTCTCAAAACTCTTTTAAGGTGAAATTCCCTCTTCCTGACCCAAAAGA 643
Query 540 CCCGTTTTCTTTAAAACCCGGTTCTATTCCTTGTACAACACATGAGAAGAAAGCACTTGA 599
||||||||| |||||||| ||||||||||||||||||| || |||||||||| ||||||
Sbjct 644 CCCGTTTTCCTTAAAACCTGGTTCTATTCCTTGTACAATGCAAGAGAAGAAAGAACTTGA 703
Query 600 TTCAGAGCAAGTTACCAGTCTCACAGCTGCAAT 632
|||| ||||||||||||| ||||||||||||||
Sbjct 704 TTCAAAGCAAGTTACCAGCCTCACAGCTGCAAT 736
Score = 645 bits (349), Expect = 0.0
Identities = 405/431 (94%), Gaps = 7/431 (2%)
Strand=Plus/Plus
Query 601 TCAGAGCAAGTTACCAGTCTCACAGCTGCAATTGCCGGTGCAAAAGCAGCGGCGACACAA 660
||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 736 TCA-AGCAAGTTACCAGCCTCACAGCTGCAATCGCCGGTGCAAAAGCAGCGGCGACACAA 794
Query 661 TTTTCAAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTTTCTAAGAAGGGACAAAGTCTCCAAACAAATAATATATTTGATTACACAACAAGAAGC 854
Query 721 AAGAGCAAAGTTATTGAAGATGATGCATCAGAATCCCTGGATAACCCGGTTCTTGGTTCT 780
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 855 AAGAGCAAAGTTATTGAAGATGAAGCAGCAGAATCCCTAGATAACCCGGTTCTTGGTTCT 914
Query 781 GGTGGAACGTGTGACCATACTTATACAACAAGAAGCAAGAACAAAGGCACACAGATGGGT 840
|||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 915 GGTGGAACGTCTGACCGTACTTATAGAACAAGAAGCAAGAACAGAGGCACACAGATGGGT 974
Query 841 GAAGAAGTATGTAGTGAAAGCAGCA---GCAGCAG-A--GTGGAATCTAGTCAAAGAAGT 894
||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 975 GAAGAAGTATGTAGTGAAAGCAGCAACAGCAGCAGCAAAGTTGAATCTAGTCAAAGAAGT 1034
Query 895 GTAGTCACAAAGAGAGAGGACAGGAATACAAGTATTGGTGAAAGAAGGTTTGATCCTGGA 954
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1035 GCAGTCACAAAGAGTGAGGACAGGAATACAAGAATTGGTGAAAGAAGGTTTGATCCTGGA 1094
Query 955 TCTGCCCGGATTATGGCCGCTGCAATTAGGAACTTGAAGCCACCGTCTTGATCTATTGTG 1014
||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 1095 TCTGCCCGGATCATGGCCGCTGCAATTAGGAACTTGAAGCCACCTTCTTGATCTAATGCG 1154
Query 1015 ACAAGGTTGTA 1025
||||||||||
Sbjct 1155 TCAAGGTTGTA 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5