BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931920

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   643    0.0  


> AT2G20500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 13 Blast hits 
to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:8835120-8836044 REVERSE 
LENGTH=925
Length=925

 Score =  643 bits (348),  Expect = 0.0
 Identities = 419/453 (92%), Gaps = 6/453 (1%)
 Strand=Plus/Plus

Query  1    TCTCAACAATCTTAAGAGTCATGTCTTGCCTGAGAATTAGGCTTTTACCTGCTAAAAGAG  60
            ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  315  TCTCAACAATCTTAAGAGTCATGTCTTGCCTTAGAATTAGGCTTTTACCTGCCAAAAGAG  374

Query  61   CTTGGAAAAGCTTCACCACCAGCTTCCATAAACTCCGGAGATCCAAAACTAAACACCACA  120
            ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct  375  CTTGGAAAAGCTTCACCGCCAGCTTCCATAAACTCCGGGGATCCAAAACCAAACACCACA  434

Query  121  CCAAGTACAGTGCAGCAACTTCGGACAAACATTTCTTTCGTTCAAGCCACAC-ATCCAGG  179
            |||||||||  ||| |||||||||||||||||||| |||||||||||||| | ||||| |
Sbjct  435  CCAAGTACAAAGCATCAACTTCGGACAAACATTTCCTTCGTTCAAGCCAC-CGATCCA-G  492

Query  180  A-AGAA-GCTTCGAGACAGAGATTCCTGTGttttttttACCCGTCTAAAGAGAGGTTGTT  237
            | |||| | ||||||||||||||||| |||||||||| | ||| || |||||||||||||
Sbjct  493  AGAGAATG-TTCGAGACAGAGATTCCCGTGTTTTTTTCATCCGCCTGAAGAGAGGTTGTT  551

Query  238  TGTTCAAGAAGAAACGCAAAGCTGTTGTCTACGTTGATAAGCTCTTCAGGGAACCTATGG  297
            ||||||||||||||||||||| |||||| || || ||||||||||||||||| ||| | |
Sbjct  552  TGTTCAAGAAGAAACGCAAAGATGTTGTATATGTGGATAAGCTCTTCAGGGAGCCTGTAG  611

Query  298  CTGTATCCAATTGGATTCCAGCAAAGCAGTGGAAGCCGAAGGAGGAATTGTTTCCGGAGA  357
            |||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct  612  CTGTGTCCAATTGGATTCCAGCAAAGCAATGGAAACCGAAGGAAGAATTGTTTCCGGAGA  671

Query  358  AGGGAATAGACGAAAGAGCCGAAGAGTTCATCACTAGAGTGAAAGCAGAGATTCTCGCTT  417
            ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  672  AGGGAATAGACGAAAGAGCTGAAGAGTTCATCACTAGAGTCAAAGCAGAGATTCTCGCTT  731

Query  418  CACGCAACTTGTAGTACCCATAATCAACACAAT  450
            ||||||||||||||||||||| |||||||||||
Sbjct  732  CACGCAACTTGTAGTACCCATCATCAACACAAT  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21464328823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5