BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931925
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor 21... 2519 0.0
AT2G20555.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 375 5e-103
AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 73.1 8e-12
> AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor
21 | chr2:8844160-8845764 FORWARD LENGTH=1605
Length=1605
Score = 2519 bits (1364), Expect = 0.0
Identities = 1528/1608 (95%), Gaps = 8/1608 (0%)
Strand=Plus/Plus
Query 22 ATGGCGTTTCATGGAATCAGAGAACTTGAAAACTATTTTATACCTTTCCTTCAGCGAGTC 81
|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 1 ATGGCGTTTCATGGAATCAGAGAAGTTGAAAACTATTTTATACCTTTTCTACAGCGAGTC 60
Query 82 AAAAGCCGAAATGAATGGAAGAAGATCCATGCCTGCATCATCGTACATGGATTATCACAA 141
|||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 61 AAAAGCCGCAATGAATGGAAGAAGATCAATGCCTCCATCATCATACATGGATTATCACAA 120
Query 142 AGCAGCTTCATGGTCACTAAAATGGTGGATTTATGTGATAAGCTTGGAGATATGGATTAT 201
|||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 121 AGCAGCTTCATGGTCACTAAAATGGTGGATTTTTGTGATAAGATTGAAGATATGGATTAT 180
Query 202 GCAACTCGTCTTTTTAACCAAGTATCGAATCCTAATGTCTTCTTATACAATTCCATTATT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 GCAACTCGTCTTTTTAACCAAGTATCGAATCCTAATGTCTTCTTATACAATTCTATAATT 240
Query 262 CGTGCTTATACACACAATTCCTTGTACTGCGATGTGATCAGAATCTACAAGCAACTGTTG 321
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 241 CGTGCTTATACTCACAATTCATTGTACTGCGATGTGATCAGAATCTACAAGCAACTGCTC 300
Query 322 AGGAAGACCATTGAGTTTCCAGATCGGTTCACGTTT-CCGTTTATGTTTAAATCTTGTGC 380
||||||| | ||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 301 AGGAAGAGCTTTGAGTTACCAGATCGGTTCAC-TTTCCCGTTTATGTTTAAATCTTGTGC 359
Query 381 AAGTCTTGGATCATGTTATTTAGGGAAGCAAGTTCATGGTCATCTCTACAAATTCGGGCC 440
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GAGTCTTGGATCATGTTATTTAGGGAAGCAAGTTCATGGTCATCTCTGCAAATTCGGGCC 419
Query 441 TAGGTTCCATGTTGTGACTGAGAATGCGCTGATTGATATGTATATGAAGTTTGATGACCT 500
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 420 TAGGTTCCATGTTGTGACTGAGAATGCATTGATTGATATGTACATGAAGTTTGATGATCT 479
Query 501 TGTTGATGCACATAAAGTGTTTGATGAAATGTCTGAGAGAGATGTTATATCGTGGAATAG 560
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 480 TGTTGATGCACATAAAGTGTTTGATGAAATGTATGAGAGAGATGTTATATCTTGGAATAG 539
Query 561 TTTGCTTTCTGGATATGCAAGGCTTGGGCAGATGAAGAAAGCAAAAGGGTTGTTTCATTT 620
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TTTGCTTTCTGGATATGCAAGGCTTGGGCAGATGAAGAAAGCAAAAGGCTTGTTTCATTT 599
Query 621 GATGATAGATAAAACTATTGTATCTTGGACTGCGATGATCTCTGGGTATACTGGGATTGG 680
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGCTAGATAAAACTATTGTATCTTGGACTGCGATGATCTCTGGGTATACTGGGATTGG 659
Query 681 TTGTTATGTAGAGGCTATGGATTTCTTCCGTGAAATGCAGTTAGCTGGTATTGAGCCTGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTTATGTAGAGGCTATGGATTTCTTCCGTGAAATGCAGTTAGCTGGTATTGAGCCTGA 719
Query 741 TGAGATCAGTCTCATTTCTGTTTTACCGTCGTGTGCGCATCTTGGATCTTTAGAGCTTGG 800
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 720 TGAGATCAGTCTCATTTCTGTTTTACCGTCGTGTGCGCAGCTCGGATCTCTAGAGCTTGG 779
Query 801 GAAATGGATCCATATGTATGCAGAGAGAAGAGGGCTTT-TGAAACAAACTGGTGTTTGCA 859
||||||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 780 GAAATGGATCCATCTATATGCAGAGAGAAGAGGG-TTTCTGAAACAAACTGGTGTTTGCA 838
Query 860 ATGCTCTTATTGAAATGTACTCGAAATGCGGTATGATTTGTCAAGCTATCCAATTGTTCG 919
|||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
Sbjct 839 ATGCTCTTATTGAAATGTACTCGAAATGTGGTGTGATTAGTCAAGCTATCCAATTGTTTG 898
Query 920 AGC-AAATGAAAGGGAAAGATGTTATATCATGGAGTACGATGATCTCAGGGTATGCATAT 978
|| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 899 -GCCAAATGGAAGGGAAAGATGTTATATCATGGAGTACGATGATCTCTGGGTATGCATAT 957
Query 979 CACGGGAACGCTCACCGAGCATTTGAAACATTCATTGAAATGCAGAGAGCGAAGGTGAAG 1038
||||||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 958 CACGGGAACGCTCACGGAGCAATCGAAACATTCAATGAAATGCAGAGAGCGAAGGTGAAG 1017
Query 1039 CCTAACGGGATCACATTTCTTGGTCTTTTATCAGCTTGTTCACATGTTGGTCTGTGGCAA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 CCTAACGGGATCACATTTCTTGGTCTTTTATCAGCTTGTTCACATGTTGGTATGTGGCAA 1077
Query 1099 CAAGGGTTGAAGTATTTTGATATGATGAGACAAGATTATCAGATAGAACCCAAGATCGAA 1158
||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1078 GAAGGGTTGAGGTATTTTGATATGATGAGACAAGATTATCAAATAGAACCTAAGATCGAA 1137
Query 1159 CACTATGGTTGTTTGATTGATGTTTTAGCAAGAGCGGGAAAACTAGAACGAGCTGTTGAA 1218
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1138 CACTATGGCTGTTTGATTGATGTTTTGGCAAGAGCAGGAAAACTAGAACGAGCTGTTGAA 1197
Query 1219 ATAACAAAGACAATGCCGGTGAAACCCGACTCAAAGATATGGGGTTCATTGTTGAGCTCT 1278
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1198 ATAACAAAGACAATGCCGATGAAACCCGACTCGAAGATATGGGGTTCATTGTTGAGCTCT 1257
Query 1279 TGCAGAACAA-AGGGCAATCTTGATGTTGCACTGGTTGCAATGGATCATCTTGTGGAGGT 1337
||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1258 TGCAGAACACCAGG-CAATCTTGATGTTGCTCTGGTTGCAATGGATCATCTTGTGGAGCT 1316
Query 1338 AGAGCCGGATGATATGGGGAATTATGTTTTGCTTGCCAATATCTACGCAGATTTGGGAAA 1397
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1317 AGAGCCGGAGGATATGGGAAATTATGTTTTGCTTGCCAATATTTACGCAGATTTGGGAAA 1376
Query 1398 ATGGGAGGATGTTTCGAGATTGAGAAAGATGATAAGGAACGAAAATATGAAGAAAACGCC 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGGGAGGATGTTTCGAGATTGAGAAAGATGATAAGGAACGAAAATATGAAGAAAACGCC 1436
Query 1458 AGGTTGTAGTTTGATAGAAGTGAACAACATTGTTCAGGAATTCGTTGCAGGAGATAACAG 1517
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1437 AGGTGGTAGTTTGATAGAAGTGAACAACATTGTTCAGGAATTCGTTTCAGGAGATAACAG 1496
Query 1518 TAAACCTTTTTGGACTGAGATCTCTCTAGTGTTGCAACTGTTTACTTCACATCAGGATCA 1577
||||||||||||||||||||| ||| ||||| |||| |||||||||||||||| |||||
Sbjct 1497 TAAACCTTTTTGGACTGAGATATCTATAGTGCTGCAGTTGTTTACTTCACATCAAGATCA 1556
Query 1578 GGATGTGATTAAAAACAACAATGCTCTTGCATTTATCGGTATGGTTTA 1625
||||||||||| |||||||||||||||||||||||| || || |||||
Sbjct 1557 GGATGTGATTACAAACAACAATGCTCTTGCATTTATAGGCATAGTTTA 1604
> AT2G20555.1 | Symbols: | pseudogene of pentatricopeptide (PPR)
repeat-containing protein | chr2:8847445-8848168 FORWARD
LENGTH=724
Length=724
Score = 375 bits (203), Expect = 5e-103
Identities = 267/296 (90%), Gaps = 12/296 (4%)
Strand=Plus/Plus
Query 1101 AGGGTTGAAGTATTTTGAT-ATGATGAGACAAGATTATCAGATAGA-ACCCAAGATCGAA 1158
||||||||||||||||| | |||||||||||||||| ||| ||| | |||||| | |||
Sbjct 263 AGGGTTGAAGTATTTTGTTAATGATGAGACAAGATTTTCAAATA-ATACCCAA-TTTGAA 320
Query 1159 CACTA---TGGTTGTTTGATTGATGTTTTAGCAAGAGCGGGAAAACTAGAACGAGCTGTT 1215
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CACTACGGTTGTTGTTTGATTGATGTTTTAGCAAGAGCGGGAAAACTAGAACGAGCTGTT 380
Query 1216 GAAATAACAAAGACAATGCCGGTGAAACCCGACTCAAAGATATGGGGTTCATTGTTGAGC 1275
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CAAATAAC--AGACAATGCCGGTGAAACCCGACTCAAAGATATGGGGTTCATTGTTGAGC 438
Query 1276 TCTTGCAGAACAAAGGGCAATCTTGATGTTGCACTGGTTGCAATGGATCATCTTGTGGAG 1335
| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 439 TATTGCAGAAGAAAGGGCAATCTTGATGTTTCTCTGGTTGCAATGGATCATCTTGTGGAG 498
Query 1336 GTAGAGCCGGATGATATGGGGAATTATGTTTTGCTT-GCCAATATCTACGCAGATT 1390
||||||| || |||||||| | || |||||||||| || ||||| ||||||||||
Sbjct 499 CTAGAGCCAGAGGATATGGG-AGTTGTGTTTTGCTTTGC-AATATTTACGCAGATT 552
Score = 132 bits (71), Expect = 1e-29
Identities = 125/150 (83%), Gaps = 8/150 (5%)
Strand=Plus/Plus
Query 1478 TGAACAACATTGTTCAGGAATTCGTTGCAGGAGA-TAACAGTAAACCTTTTTGGACTGAG 1536
||||||| ||||||||||||| || ||||| || || |||||||||||||||||||||
Sbjct 580 TGAACAATGTTGTTCAGGAATTTGTAGCAGGTGACAAAAAGTAAACCTTTTTGGACTGAG 639
Query 1537 ATCTCTCTAGTGTTGCAACTGTTTACTTCACATCAGGATCAGGATGTGATTAAAAACAAC 1596
|||||||| |||||||| || | ||| || ||| ||||| |||||| || ||||| |
Sbjct 640 ATCTCTCTCGTGTTGCA---GTAT-CTT-ACTTCAT-ATCAGAATGTGACTAGAAACAGC 693
Query 1597 AATGCTCTTGCATTTATCGGTATGG-TTTA 1625
|| |||||||||||||| ||||||| ||||
Sbjct 694 AACGCTCTTGCATTTATAGGTATGGATTTA 723
> AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:15664800-15667079 REVERSE LENGTH=2280
Length=2280
Score = 73.1 bits (39), Expect = 8e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 514 AAAGTGTTTGATGAAATGTCTGAGAGAGATGTTATATCGTGGAAT 558
||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 566 AAAGTGTTTGATGAAATGTCTGAGAGAGATGTTGTTTCGTGGAAT 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5