BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931939
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20630.2 | Symbols: PIA1 | PP2C induced by AVRRPM1 | chr2:88... 1349 0.0
> AT2G20630.2 | Symbols: PIA1 | PP2C induced by AVRRPM1 | chr2:8896912-8899835
REVERSE LENGTH=1483
Length=1483
Score = 1349 bits (730), Expect = 0.0
Identities = 806/844 (95%), Gaps = 0/844 (0%)
Strand=Plus/Plus
Query 1 AGAAACAAATTCTTGTAACAATGACAGGCAGAGAGATTCTCCATAAGATGAAGGTTGGAT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 168 AGAAACAAATTCTTGTAACAATGGCAGGCAGAGAGATTCTCCATAAGATGAAGGTTGGAT 227
Query 61 TATGCGGATCTGACACAGGCAGAGGTAAAAGCAAGATGTGGAAGAACATCGCACACGGTT 120
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 228 TATGCGGATCTGACACAGGCAGAGGTAAAACCAAGGTGTGGAAGAACATCGCACACGGTT 287
Query 121 ATGACTTTGTGAAAGGCAAAGCGTGCCATCCAATGGAGGACTATGTTGTGTCTGAGTTCA 180
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 288 ATGACTTTGTGAAAGGCAAAGCGGGCCATCCGATGGAGGACTATGTTGTGTCTGAGTTCA 347
Query 181 AGAAAGTAGACGGCCATGATTTGGGTTTGTTTGCTATCTTTGACGGTCATTTAGGGCATG 240
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 348 AGAAAGTAGACGGCCATGATTTGGGTTTGTTTGCTATCTTTGATGGTCACTTAGGGCATG 407
Query 241 ATGTGGCCAAGTACTTGCAGACCAATCTCTTTGATAACATACTCAAAGAGAAAGATTTTT 300
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 408 ATGTAGCCAAGTACTTGCAAACCAATCTCTTTGATAACATACTCAAAGAGAAGGATTTTT 467
Query 301 GGACTGATACGGAAAACGCTATAAGGAATGCATACATATCAACGGATGCTGTGATATTAG 360
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 468 GGACTGATACGAAAAACGCTATAAGGAATGCATACATATCAACCGATGCTGTGATATTAG 527
Query 361 AGCAGTCACTTAAACTTGGCAAAGGCGGATCAACGGCTGTAACAGGCATCCTGATAGATG 420
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 528 AGCAGTCACTTAAACTTGGCAAAGGTGGATCAACGGCTGTAACAGGCATTCTGATAGATG 587
Query 421 GGAAAAAGCTAGTGGTTGCTAATGTTGGAGACTCACGAGCAGTGATGTCAAAGAATGGTG 480
|||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 588 GGAAAACGCTAGTGATTGCTAACGTTGGAGACTCACGTGCAGTGATGTCAAAGAACGGTG 647
Query 481 TTGCTTATCAACTCTCTGTTGATCATGAACCAAGCAAGGAGCAAAAAGAAATAGAAAGCC 540
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 648 TTGCTTCTCAACTCTCTGTTGATCATGAACCAAGCAAGGAACAAAAGGAAATAGAAAGCC 707
Query 541 GTGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTGGTGGCTTTGTATCAAATATTCCAGGGGATGTTCCAAGAGTTGATGGACAACTAGCGG 767
Query 601 TTGCGAGGGCATTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGAACCAGACATAA 660
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 768 TTGCTAGGGCGTTTGGAGATAAGAGCTTAAAGATACATCTGAGCTCAGATCCAGACATAA 827
Query 661 CACACCAGACTATCGATGATGAGACTGAGTTCATCGTTTTTGCAAGTGATGGAATTTGGA 720
| || ||| ||||||| ||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct 828 GAGACGAGAATATCGATCATGAGACTGAGTTTATCCTTTTCGCAAGTGATGGAGTTTGGA 887
Query 721 AGGTGTTGTCGAACCAAGAAGCGGTGGATGTGATCAAAAGCATAAAAGATCCACAAGCGG 780
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 888 AGGTGATGTCGAACCAAGAAGCGGTGGATTTGATCAAAAGCATAAAAGATCCACAAGCGG 947
Query 781 CAGCCAAGGAGTTGATAGAAGAAGCAGTCTCTAAGAAAAGCACAGACGACATCTCTTGTA 840
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 948 CAGCCAAGGAGTTGATAGAAGAAGCAGTCTCTAAGCAAAGCACAGACGACATTTCTTGTA 1007
Query 841 TAGT 844
||||
Sbjct 1008 TAGT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42950195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5