BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931953

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20724.1 | Symbols:  | pseudogene of unknown protein | chr2:...   243    8e-64
  AT2G20721.1 | Symbols:  | snoRNA | chr2:8931565-8931655 REVERSE...   147    6e-35


> AT2G20724.1 | Symbols:  | pseudogene of unknown protein | chr2:8932716-8933262 
REVERSE LENGTH=547
Length=547

 Score =  243 bits (131),  Expect = 8e-64
 Identities = 135/137 (99%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  8    aagaaagaagaagaTGGGAGCATTTGAGGATCAGGTGAAGATGAGGGCCTTGGAGCTGAA  67
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  261  AAGAAAGAAGAAGATGGGAGCATTTGAGGATCAGGTGAAGATGAGGGCGTTGGAGCTGAA  320

Query  68   ACAGCTGTTCAAGAAAGGCATCAAAGTTGTCGGCAAATCTTGTAAGAAGGGTTGGTCCAA  127
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  ACATCTGTTCAAGAAAGGCATCAAAGTTGTCGGCAAATCTTGTAAGAAGGGTTGGTCCAA  380

Query  128  AGTCAAGAACCTTCGTC  144
            |||||||||||||||||
Sbjct  381  AGTCAAGAACCTTCGTC  397


> AT2G20721.1 | Symbols:  | snoRNA | chr2:8931565-8931655 REVERSE 
LENGTH=91
Length=91

 Score =  147 bits (79),  Expect = 6e-35
 Identities = 87/91 (96%), Gaps = 0/91 (0%)
 Strand=Plus/Plus

Query  147  GCTGGTGATGATGTTTTATATCTTTGCCTACATTGCCTGATCAAAGCTATTTTTAGCTTT  206
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    GCTGGTGATGATGTTTCATATCTTTGCCTACATTGCCTGATCAAAGCTATTTTTGGCTTT  60

Query  207  GAACAAGTGACTGAATGATAAACTGCTGAAG  237
            |||||||||| ||||||||||||| ||||||
Sbjct  61   GAACAAGTGAGTGAATGATAAACTTCTGAAG  91



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11058904780


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5