BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931954
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20725.1 | Symbols: | CAAX amino terminal protease family p... 1439 0.0
> AT2G20725.1 | Symbols: | CAAX amino terminal protease family
protein | chr2:8933571-8935496 REVERSE LENGTH=1518
Length=1518
Score = 1439 bits (779), Expect = 0.0
Identities = 895/950 (94%), Gaps = 11/950 (1%)
Strand=Plus/Plus
Query 1 CTCTCTGGTCAGAGACGGCGATGATTCTAGGCCGATGGGTTTCCTTCAGTTGCGTCAACA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 51 CTCTCTGGTCAGAGACGGCGATGATTCTAGGCCGATGGGTTTCCTTCAGTTGCGGAAACA 110
Query 61 CGCCGGTTACTAAGGT-TTCCGACCGACGAAGACATTCGGAGTTTCGTGGTCTCTCCTCT 119
||||||| ||||| | |||||| |||||| ||||| ||||||||||| |||||||||||
Sbjct 111 CGCCGGTGACTAA-TTGTTCCGAACGACGACGACATACGGAGTTTCGTCGTCTCTCCTCT 169
Query 120 ACTACCACTTGTCGTCCTTCTCTCAGATGCTCTTGTCTCAAAAGCAAATCCACACAAGAA 179
||| |||||||| |||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 170 GCTAGTACTTGTCGACCTTCTCTCATATGCTCTTGTCTCAAAAGCAAATCCTCCCAAGAA 229
Query 180 ACTACTCAGATTGAGA-AGTTGGGGAATGAACAAGGGTTCTCCGTTTTGGCATCAGAGAT 238
|||||||||||||| | |||||||||||| | |||||||||| |||||||||||||||||
Sbjct 230 ACTACTCAGATTGA-ACAGTTGGGGAATGGAGAAGGGTTCTCAGTTTTGGCATCAGAGAT 288
Query 239 TCCATGGGAAGATAATAACATATGGAGCACATTTGCTCTTTACATGTTCTCTCTGCATAT 298
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TCCATGGGAGGATGATAACATATGGAGCACATTTGCTCTTTACATGTTCTCTCTGCATAT 348
Query 299 TCCTCTCAGTTTTGGGGGTTTATCCATTGTTGCCAACACACTCCACCGGCAGGTTCTTGA 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 349 TCCTCTCAGTTTTGGGGGTTTATCCATTGTTGCCAACATACTCCACCGGCAGGTTCTTGA 408
Query 359 TCCTCAGACCCAAGTGCTATCACTTGTGGTTCTCCAAATGGTAGAACTTTCAGGGACAGT 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 409 TCCTCAGACCCAAGTGCTATCACTTGTGGTTCTCCAAATGGTAGAACTTGCAGGGACAGT 468
Query 419 CTTGCTGCTGAGGACCACAGCGAAGCCTCAGTTCAAATCAATCAACTTTCTAAAGGGTAA 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 469 CTTGCTGCTGAGGACCACAGCGAAGCCTCAGTGCAAATCAATCAACTTTCTAAAGGGTAA 528
Query 479 TAATGAATCAAGAGAAGGAAGAAACTGGGTGGTTGGCTCAGCATTGGGTTTGGGATGTCT 538
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TAACGAAACAAGGGAAGGAAGAAACTGGGTGGTTGGCTCAGCATTGGGTTTGGGATGTCT 588
Query 539 TGTGGGCTTTATCTTCGTCACGTCGCTTGTAGCTGATCAACTCTTTGGCTCTAAGGCTGT 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 589 TGTGGGCTTTATCTTCGTCACGTCGCTTGTAGCTGATCAACTCTTTGGCCCTAAGGCTGT 648
Query 599 ACATGAATCTGAATTGGAGAAGATAATGGTGAGCGGGGAAGTGGCGAGAAGCG-AGTGTT 657
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 649 ACATGAATCAGAATTGGAGAAGATAATGGTGAGCGGGGAAGTGGCGAGAAGCGGA-TGTT 707
Query 658 TTGCTCTCTACTGCGGT-GTAGCTCCCATCCTTGAGGAGATAGTGTACAGACGCTTTCTA 716
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TTGCTCTCTACTGCG-TAGTAGCTCCCATCCTTGAGGAGATAGTGTACAGACGCTTTCTC 766
Query 717 CTGACCTCCTTAGCGTCGAGAATGGAATGGTGGAAGGCACTAGTGATCAGCTCAGGAGTA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CTGACCTCCTTAGCGTCGAGAATGGAATGGTGGAAGGCACTAGTGATCAGCTCAGGAGTA 826
Query 777 TTTGCAGCAGCTCACTTCTCAGGTCAGGATTTTGTGCAGCTGTTTGGGATAGGGTGCATT 836
||||| |||| ||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 827 TTTGCTGCAGGTCACTTCTCAGGTGAGGATTTTGTGCAGCTGTTTGGGATAGGTTGCGGT 886
Query 837 ATCGGGTCATGTTACATCTGGTCAGGGAACTTGGCCTCGTCAGTGCTCGTCCACTCATTG 896
|||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 887 CTCGGGTTATGTTACAGCTGGTCAGGGAACTTAGCCTCATCAGTGCTCGTCCACTCCTTG 946
Query 897 TACAATGCCTTAACAAT-C-CT-CTCTTAGCCACGTTCAGATGACAAGGA 943
|||||||| || ||| | | || |||||||||||||||||||||||||||
Sbjct 947 TACAATGCATTGACACTTCTCTTCTCTTAGCCACGTTCAGATGACAAGGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5