BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931957
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20760.1 | Symbols: | Clathrin light chain protein | chr2:8... 1325 0.0
> AT2G20760.1 | Symbols: | Clathrin light chain protein | chr2:8942763-8945244
REVERSE LENGTH=1669
Length=1669
Score = 1325 bits (717), Expect = 0.0
Identities = 957/1060 (90%), Gaps = 67/1060 (6%)
Strand=Plus/Plus
Query 22 CATGGCGACTTTTGACGACGGAGATTTCCCAGCTCAAACCCATTCTCCGTCTGAACACGA 81
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CATGGCGACTTTTGATGATGGAGATTTCCCAGCTCAAACCCATTCTCCGTCTGAACACGA 195
Query 82 CGACTTTGGTGGCTACGATAATTTCTCCGAAGCCCAGCAACCTCCGACTCAACATCAATC 141
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 196 AGACTTTGGTGGCTACGATAATTTCTCCGAAGCACAGCAACCTCCGACTCAACATCAATC 255
Query 142 CGGTGGATTCTCTTCTTTTAATGGAGATGGAGCTTATGGATCTGAGAATCCTGCTTCCCC 201
||||||||||||||| | | | | | || ||| |||||||||||||
Sbjct 256 CGGTGGATTCTCTTC---T--T-----T----C--A---AT-GGAG-ATCCTGCTTCCCC 294
Query 202 AAATGGATATGGATTTGGTGCTTCCTCACCTAACCATGACTTTTCCTCGCCTTTTGAATC 261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 AAATGGATATGGATTTGGTGCTTCTTCACCTAACCATGACTTTTCCTCGCCTTTTGAATC 354
Query 262 TTCCGTTAACGATGCTAACGG--A----------AGC---GGTGATGCGATCTTCGCTTC 306
||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 355 TTCCGTTAACGATGCTAACGGAAACGGCGGCGGCAGCGGTGGTGATGCGATCTTCGCTTC 414
Query 307 CGATGGTCCGATTCTTCCAGATCCAAATGAGATGCGGGAGGAGGGTTTCCAACGCCGTGA 366
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 415 CGATGGTCCGATTCTTCCAGATCCAAATGAGATGAGAGAGGAGGGTTTCCAACGCCGTGA 474
Query 367 GTGGCGCCGTCTGAACACTATTCACCTTGAGGAGAAGGAAAAGAAAGAGAAGGAGATGCG 426
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTGGCGCCGTTTGAACACCATTCACCTTGAGGAGAAGGAAAAGAAAGAGAAGGAGATGCG 534
Query 427 GAATCAGATCATAACTGAAGCAGAAGAATACAAGAAATCCTTCTATGAGAAAAGAGAGAA 486
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||
Sbjct 535 GAATCAGATCATAACTGAAGCAGAAGATTTCAAGAAAGCCTTCTATGAGAAAAGAGACAA 594
Query 487 GACCATTGAGACCAACAAGACTGATAACCGCGAAAAGGAGAAGCTATACTGGGCTAACCA 546
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 GACCATTGAGACCAACAAGACTGATAACCGTGAAAAGGAGAAGCTATACTGGGCTAACCA 654
Query 547 AGAGAAGTTCCACAAAGAAGTTGACAAGCATTACTGGAAAGCAATTGCAGAGCTAATCCC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGAGAAGTTCCACAAAGAAGTTGACAAGCATTACTGGAAAGCAATTGCAGAGCTAATCCC 714
Query 607 GCGTGAGGTTCCCAACATCGAGAAGAAGAGAGGGAAAAAGGATCCGGACAAGAAACCATC 666
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 715 TCGTGAGGTTCCCAACATTGAGAAAAAGAGAGGGAAAAAGGATCCGGACAAGAAACCATC 774
Query 667 AGTGAATGTTATCCAGGGTCCTAAACCTGGGAAGCCAACTGACCTAGGGAGAATGAGACA 726
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 775 AGTGAATGTTATTCAGGGTCCTAAACCTGGGAAGCCAACTGATCTAGGGAGAATGAGGCA 834
Query 727 GATATTCTTGAAGCTCAAGACAAAACCCCCACCCCACATGATGCCGCCTCCTCCTCCAGC 786
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 835 GATATTCTTGAAGCTCAAGACAAATCCCCCACCTCACATGATGCCGCCTCCTCCTCCAGC 894
Query 787 CAAAGATGCCAAAGATGGGAAGGATGCCAAAGATGGCAAAGATGCAAAAGCTGGGAAAGA 846
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 895 CAAAGATGCCAAAGATGGGAAGGATGCGAAAGATGGCAAAGATGCAAAAACTGGGAAAGA 954
Query 847 CGCCAAGGACTT-AAAAG-ATGGGAAA--C-CT--G--C--A---GAT------CC---A 883
| ||||| | ||||| | |||||| | || | | | ||| || |
Sbjct 955 TGGGAAGGA-TGCAAAAGGA-GGGAAAGACGCTAAGGACTTAAAAGATGGGAAACCTGCA 1012
Query 884 -A---A--GGTGACAGAGGAAAAACCTGCTTCACCTGCCAAAGACGCAAGTGTTGAAACA 937
| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1013 GATCCAAAGGTGACAGAGGAAAAACGTCCTTCACCTGCCAAAGACGCAAGTGTTGAAACA 1072
Query 938 GCGAAACCTGATGCTGCTGCCTCGGTAGAGGGAGAGAAACCTGTGGCTGTGACTGAGGCT 997
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1073 GCGAAACCTGATGCTGCTGCCTCGGGAGAGGGAGAGAAACCTGTAGCTGTGACTGAGGCC 1132
Query 998 GAGGGAGCCAAGGCAGAGTGAAGGGTCTTTAGTATTACTG 1037
|||||| ||||||| |||||||||||||||||||||||||
Sbjct 1133 GAGGGAACCAAGGCGGAGTGAAGGGTCTTTAGTATTACTG 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5