BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931960
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20790.1 | Symbols: | clathrin adaptor complexes medium sub... 2929 0.0
> AT2G20790.1 | Symbols: | clathrin adaptor complexes medium subunit
family protein | chr2:8949928-8952744 REVERSE LENGTH=2207
Length=2207
Score = 2929 bits (1586), Expect = 0.0
Identities = 1782/1873 (95%), Gaps = 28/1873 (1%)
Strand=Plus/Plus
Query 19 CAATTATGCCCTCTGGTTGCAGTATCAGAGCTCTCTGGATCATCAACAATCAAGACGCTG 78
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 CAATTATGCCCTCTGGTTGCAGTATCAGAGCTCTCTGGATCATCAACAATCAAGACACTG 186
Query 79 TTGTTTTCTCCAGGAGGTTTCCGGTCGTCGAGAAGCAATGGTGCTCCGCTTACAAGTCGG 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187 TTGTTTTCTCCAGGAGGTTTCCGGTCGTCGAGAAGCAATGGTGCTCCGCTTACAAGACGG 246
Query 139 AAAACG-AAA-AC--------A-C-TCCTAGACTTCCCACTGATCAGCAAATCTCCAACG 186
| |||| ||| || | | ||||||||||||||||||||| ||||||||| |
Sbjct 247 AGAACGAAAACACTGGATTAGATCTTCCTAGACTTCCCACTGATCAACAAATCTCCGATT 306
Query 187 CTTTTACTCGAAGAAAGAGACGGGAAGGCTCTACTCGTGGATATGGTATACGTGTTGCTC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTTTTACTCGAAGAAAGAGACGGGAAGGCTCTACTCGTGGATATGGTATACGTGTTGCTC 366
Query 247 AATCCACCAAAGGATCGGATTCTTGGGTTGATGATCCCATCACTCGTCATATTATCAGCC 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AATCCACCAAAGGATCGGATTCTTGGGTTGATGATCCCATCACTCGTCATATTATCAGCC 426
Query 307 TTTGCTTAAGCGAAGAAgatgatgatgatgatgaATCTGATAAAAACGAGAGGAACATTC 366
||||||||| ||||||||||||||||||||||| | || | | ||||||||||
Sbjct 427 TTTGCTTAACCGAAGAAGATGATGATGATGATG-A--TG------A--A-AGGAACATTC 474
Query 367 TCTGGCCTATTGCCCTGCACACTAAAGCCCTTTACTCTATCCTCGTCTTGCCTTTGGTTG 426
||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 475 TCTGGCCTATTGCTCTGCATACCAAAGCGCTTTACTCTATCCTCGTCTTGCCTTTGGTTG 534
Query 427 AGCCAAAGGAGATGAAAGATTACGTCAAG-TTATGTAGGAGATCTGATTGTGGACCAGCT 485
|||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 535 AGCCAAAGGAGATGAAGGATTACGTCAAGCTT-TGTAGGAGATCTGATTGTGGACCAGCT 593
Query 486 GTTGGTGAAGATTTGAGTTTGTCATCTCTCTTACTTAACATTTCATCCATTACAGGGGCT 545
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 594 GTTGGTGAAGATTTGAGTTTATCATCTCTCTTGCTTAACATTTCATCCATTACAGGGGCT 653
Query 546 TTCATGGTGGCTCATGCATTTGGTGACATCGTTTCTGGTGATACTGTGGAACCTGAGGTT 605
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 654 TTTATGGTGGCTCATGCATTTGGTGACATCATTTCTGGTGATACAGTGGAACCTGAGGTT 713
Query 606 GTTGTAAGTGCGTCTCCATCAGTTGGTGGGTTGTTTGATTCAATAACTGGAAGCATTGGT 665
|||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 714 GTTGTAAGTGTGTCACCATCAGTTGGGGGGTTGTTTGATTCACTAACTGGAAGCATTGGT 773
Query 666 ATCTCATCTAGGGCAAAACCCGTACCTGCACC-GCTTGCATCTTCTTCCCCGTCTGGAGC 724
|||||||| ||||| ||||| ||| ||||||| | ||||||| ||| ||||||||||||
Sbjct 774 ATCTCATCGAGGGCTAAACCTGTAGCTGCACCTG-TTGCATCATCTAACCCGTCTGGAGC 832
Query 725 TGCAACAACAGGAGCCACAGCATCGGATGCTCCCAAAGCAGGGTCGAGGTTACTGGATAG 784
||||| ||| ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 833 TGCAATAACTGGAGCTACAGCATCGGATGCTCCCAAAGCAGGGTCAAGATTACTGGATAG 892
Query 785 AGATTTACTTAGAAATTTTATCGCTACTGCTATGCCGTTTGGTACCCCATTAGACCTCAG 844
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGATTTACTTAGAAACTTTATTGCTACTGCTATGCCGTTTGGTACCCCATTAGACCTCAG 952
Query 845 CTTGTCTAATATATTTGCTATGAAAGCGAATGGCTTTTCCACTGCTGATCCTCCTCCCCA 904
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 953 CTTGTCTAATATATCTGCTATGAAAGCGAATGGTTTTTCCTCTGCTGATCCTCCTCCCCA 1012
Query 905 AGAACTTAAGCAACCAGCATGGAAGCCATACCTGTACAAAGGAAAGCAAAGGCTATTGTT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGAACTTAAGCAACCAGCATGGAAGCCATACCTGTACAAAGGAAAGCAAAGGCTATTGTT 1072
Query 965 CACAATTCATGAGACCGTTAACGCTGCAATGTACGACCGCGATGAGATTCCTGATAATGT 1024
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CACAATTCATGAGACCGTTAGCGCTGCAATGTACGACCGCGATGAGATTCCTGATAATGT 1132
Query 1025 ATCTGTTGCAGGACAGATAAACTGTCGGGCAGAGCTAGAAGGGCTGCCTGATGTGTCGTT 1084
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1133 ATCTGTTGCGGGACAGATAAACTGTCGGGCAGAACTAGAAGGGCTGCCTGATGTGTCGTT 1192
Query 1085 TCCTCTAGCAGGGCTGAGTACAGCCCACATCGAAGCTATATCTTTCCATCCATGTGCTCA 1144
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1193 TCCTCTAGCAGGGCTGAGTACAGCCCATATCGAAGCTATATCTTTCCATCCATGTGCCCA 1252
Query 1145 AGTTCCAGCACATGGGATCGACAAGCAGAACATTGTTTTCCAGCCTCCCTTGGGTAACTT 1204
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGTTCCAGCACATGGGATTGACAAGCAGAACATTGTTTTCCAGCCTCCCTTGGGTAACTT 1312
Query 1205 TGTTCTCATGCGATACCAGGCAGGTTGTGGACTCGGACCACCAGTGAAAGGGTTCTATCA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGTTCTCATGCGATACCAGGCAGGTTGTGGACTCGGACCACCAGTGAAAGGGTTCTATCA 1372
Query 1265 GCTGTCAATGGTTTCAGAAGACGAGGGTGCATTCCTCTTCAAGGTGCACCTCATGGAAGG 1324
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GCTATCAATGGTTTCAGAAGACGAGGGTGCATTCCTCTTCAAGGTGCACCTCATGGAAGG 1432
Query 1325 TTACAAGGCTCCTCTGTCAATGGAATTCTGCACTATTACTATGCCCTTTCCACGGAGACG 1384
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1433 TTACAAGGCTCCTCTGTCAATGGAATTTTGCACTATTACTATGCCCTTTCCACGGAGACG 1492
Query 1385 GATAGTGGCATTTGATGGGACTCCATCAGCTGGGACTGTTTTAACCACAGAGCACTCTGT 1444
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1493 GATAGTGGCATTTGATGGGACTCCGTCAGCTGGGACTGTTTTAACCACAGAACACTCTGT 1552
Query 1445 TGAGTGGAGGATTCTGGGAAGCGGACGTAGTCTTTCTGGGAAAAGCCTTGAGGCAACTTT 1504
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TGAGTGGAGGATTCTGGGCAGCGGACGTAGTCTTTCTGGGAAAAGCCTTGAGGCAACTTT 1612
Query 1505 CCCCGGGACAATCAAGTTTAGTCCATTGCAGAGTAGGAGAAGAGGGGATGGGGATGATGA 1564
||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 1613 CCCTGGGACAATCAAGTTTAGTCCATTGCAGAGCAGAAGAAAAGGGGATGGGGATGATGA 1672
Query 1565 AGAGAGTGAGGATGAGAGCGTTGAGAATGTGGTGAACGTGGAGGACTTCTTGGTGCAGAA 1624
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGAGAGTGAGGATGAGAGCGCTGAGAATGTGGTGAACGTGGAGGACTTCTTGGTGCAGAA 1732
Query 1625 AATGAACAAGGATCTCCCAGCAGTTGAGTTGGAGGAACCGCTCTGTTGGCAAGCCTATGA 1684
||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1733 AATGAACAAGGATCTCCCAGCAGCTGAGTTGGAGGAACCGTTCTGCTGGCAAGCCTATGA 1792
Query 1685 TTATGCCAAGGTCTCGTTCAAAATTGTCGGGGCATCTGTATCTCGAATGTCAATCGACAC 1744
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1793 CTATGCCAAGGTCTCGTTCAAGATTGTCGGGGCATCTGTATCTCGAATGTCAATCGACAC 1852
Query 1745 AAAATCAGTCAATATCTACCCAACCACAAAGTCACCGGTTGAGTTTTCTGCTCAGGTGAC 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 AAAATCAGTCAATATCTACCCAACCACAAAGTCACCGGTTGAGTTTTCTGCTCAGGTGAC 1912
Query 1805 TTCAGGGGATTATATATTGTGGAACACATTGGGGAAGGCTCCATCAGCAGCCGTCGTGTA 1864
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1913 TTCAGGGGATTATATATTGTGGAACACATTGGGGAAAGCTCCATCAGCAGCCGTCGTGTG 1972
Query 1865 ATTCCCCCAAGTC 1877
||| |||||||||
Sbjct 1973 ATTTCCCCAAGTC 1985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5