BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931964
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11510.1 | Symbols: | DNA-binding storekeeper protein-relat... 340 6e-93
> AT1G11510.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:3871778-3872836 REVERSE
LENGTH=1059
Length=1059
Score = 340 bits (184), Expect = 6e-93
Identities = 413/518 (80%), Gaps = 38/518 (7%)
Strand=Plus/Plus
Query 14 TCAG-TTCATGGAAAAACTTAGGAATTTAAGGAAGAAGTATGAGAACAATCTTGTTAAAG 72
|||| || |||||||| |||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 552 TCAGCTT-ATGGAAAAGCTTAGGGCTTTAAAGAAGAAGTATGAGAACAATCTTGGTAAAG 610
Query 73 CCAA-GAGTGGTGATGAACCTACGTTT-GTAAAAACTCATGATCGCAAGGCTTTTGAATT 130
|||| || ||||| ||||||||| ||| || ||| |||||||||||||||||||||||||
Sbjct 611 CCAAGGA-TGGTGTTGAACCTAC-TTTCGTCAAACCTCATGATCGCAAGGCTTTTGAATT 668
Query 131 GTCTAAGTTTGTTTGGGGAGCTATT-GAATCAGCTGT-GAAATCTAGTGGGAAGTCGAA- 187
||||||||| |||||||||| |||| |||| ||| | | | ||| || ||| || ||
Sbjct 669 GTCTAAGTTAGTTTGGGGAGGTATTAGAATG-GCTCTTGCA-TCTGGTATGAAATCTAAT 726
Query 188 GAAGA-GTAGTAAGTCGA--AGAAAGTT-GAGTCTGTGAACCATGAGCTTGATTCTTCTT 243
|| || || | ||| || || ||||| ||||||||||| ||||| |||||||||||||
Sbjct 727 GA-GAAGTCG-AAGAAGAGTAGTAAGTTTGAGTCTGTGAAGCATGAACTTGATTCTTCTT 784
Query 244 TGCCCAATAGTAAAAACGA--G-GCTGCCGCGG--ATC--TG--G-ATACGTTTCC---- 289
||||||| ||||||||| | | | | | || || || | | | || ||
Sbjct 785 TGCCCAACAGTAAAAACAACTGTGAAGATGAGGTGATGGATGAAGGAGAAGTCTCTTTTA 844
Query 290 CAA-GTCTTCTCTTGTAAGATGGCTAGTGAGTTTTGGTTTTGATGAATTTTCTGCTCAAC 348
||| |||||||||||| |||| | ||||| || |||| | |||||| || |||||||||
Sbjct 845 CAAAGTCTTCTCTTGTTAGATCGATAGTGGGTCTTGGCATGGATGAACTTACTGCTCAAC 904
Query 349 AAGGATTGAGTT-GCCTTGCCTCAGAGGATAAGAAGAGATTCGAGGAGAAGTGGAAAGC- 406
||||||||||| || |||||||| |||||| ||||||||| | ||| ||||||||||
Sbjct 905 AAGGATTGAGTAAGC-TTGCCTCAAAGGATATGAAGAGATTTTACGAGCAGTGGAAAGCG 963
Query 407 ATTGCAGGTTAGGGAATTCGAGTTCTATTCGCAGAAG-AGCGGTTTTCTTCATGAAGTGG 465
|| ||||| ||||||||| ||||||| || ||||||| | ||||||||| |||||||
Sbjct 964 AT-GCAGGCTAGGGAATTTGAGTTCTTTTTGCAGAAGCAT-GGTTTTCTTTTTGAAGTGC 1021
Query 466 TAGCAAAGATGGCTGAAGCATTTCCATCAAATGCTTAG 503
|| ||||||| ||||||||||| |||||| ||||||
Sbjct 1022 TATCAAAGATATCTGAAGCATTTGGATCAAACGCTTAG 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25016605206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5