BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931965 Length=758 Score E Sequences producing significant alignments: (Bits) Value AT4G38870.1 | Symbols: | F-box and associated interaction doma... 99.0 6e-20 > AT4G38870.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:18132583-18133863 REVERSE LENGTH=1281 Length=1281 Score = 99.0 bits (53), Expect = 6e-20 Identities = 182/243 (75%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 52 ATAAACTCTAGCACTAGACGATCTATTA-CTCTGCCCAAGATTTATTCTCAGAGGAGAGA 110 |||| | || ||||||||||||| |||| || |||||||||| | | |||||||| Sbjct 518 ATAACCCCT-GCACTAGACGATCAATTACCT-TGCCCAAGATCAAAGCAGGGAGGAGAGC 575 Query 111 TATGTACCACTACTTAGATTATGATCCCATTCATGGTGATTACAAAGTTTTGTGTATGAC 170 || |||| ||| ||| ||||||||| || | ||| |||| ||||| |||| || || Sbjct 576 CATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTGTGCATTAC 635 Query 171 TAAAGGAATGAATATTGGTT-GG---CGACGTGGTTTAGCTGAGGACCTTCGGGTTTTGA 226 | ||| ||| || || || || |||| |||||||||||||| | | |||||||| Sbjct 636 GAGAGGCATGCCTA-TGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAGGTTTTGA 694 Query 227 CATTGGGAAAT-GGGA-GC-TCTTGGAGGATGATTGA--AGATT-TCCCTCCTCACGCAC 280 ||||||||| | |||| | || |||||||||||| | | ||| | ||||||||| | | Sbjct 695 CATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCTCACTCTC 754 Query 281 CTG 283 ||| Sbjct 755 CTG 757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36821629751 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5