BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931965

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38870.1 | Symbols:  | F-box and associated interaction doma...  99.0    6e-20


> AT4G38870.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr4:18132583-18133863 REVERSE LENGTH=1281
Length=1281

 Score = 99.0 bits (53),  Expect = 6e-20
 Identities = 182/243 (75%), Gaps = 14/243 (6%)
 Strand=Plus/Plus

Query  52   ATAAACTCTAGCACTAGACGATCTATTA-CTCTGCCCAAGATTTATTCTCAGAGGAGAGA  110
            |||| | || ||||||||||||| |||| || ||||||||||  |  |   |||||||| 
Sbjct  518  ATAACCCCT-GCACTAGACGATCAATTACCT-TGCCCAAGATCAAAGCAGGGAGGAGAGC  575

Query  111  TATGTACCACTACTTAGATTATGATCCCATTCATGGTGATTACAAAGTTTTGTGTATGAC  170
             ||  |||| ||| |||  ||||||||| || | ||| |||| |||||  |||| || ||
Sbjct  576  CATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTGTGCATTAC  635

Query  171  TAAAGGAATGAATATTGGTT-GG---CGACGTGGTTTAGCTGAGGACCTTCGGGTTTTGA  226
             | ||| |||  || || || ||    |||| ||||||||||||||  | | ||||||||
Sbjct  636  GAGAGGCATGCCTA-TGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAGGTTTTGA  694

Query  227  CATTGGGAAAT-GGGA-GC-TCTTGGAGGATGATTGA--AGATT-TCCCTCCTCACGCAC  280
            ||||||||| | ||||  | || |||||||||||| |  | ||| | ||||||||| | |
Sbjct  695  CATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCTCACTCTC  754

Query  281  CTG  283
            |||
Sbjct  755  CTG  757



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36821629751


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5