BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg931967 Length=461 Score E Sequences producing significant alignments: (Bits) Value AT2G20816.1 | Symbols: | pseudogene of protein containing meth... 448 3e-125 AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr... 355 2e-97 > AT2G20816.1 | Symbols: | pseudogene of protein containing methyl-CpG-binding domain | chr2:8962763-8963527 FORWARD LENGTH=538 Length=538 Score = 448 bits (242), Expect = 3e-125 Identities = 371/432 (86%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 16 AACCAATGACAACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGA 75 ||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||| Sbjct 113 AACCAATGACAACGTTAATTGACTCATACACTGCACAATGTTGAAAGTGTTTCAAAGTGA 172 Query 76 GATAT-GTAGAGTCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTC 133 ||||| | |||||| |||||| | ||||| | | || ||| |||| ||| || ||||| Sbjct 173 GATATAG-AGAGTCACAAGAAGAGTACGAAAAGAATCAAAGTAAAACTCCGAAAAAAGTC 231 Query 134 TTTTGAATGCAGGAGCTGTGAAGAACCTGGAGATGTGGATATGAACTTTGATTCCCCTGC 193 ||||||||||| ||| |||||| || || ||||||||| | ||||||||||||||||| Sbjct 232 TTTTGAATGCAAGAGATGTGAAAAATCTAGAGATGTGGTTGTGAACTTTGATTCCCCTAT 291 Query 194 TGTGCGTTGGTTTCAAGATCGACATGGTATACCCAAAACCCCTCAAGGGTTGAAGAGGAT 253 ||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| | Sbjct 292 TGTGCGTTGGTTTCAGGATGGACATGGTATACCCAACACCCCTCAAGGTTTGAAGAGGGT 351 Query 254 TTTGGTTGTTC-G-ACGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCT 311 |||| | | || | || |||| ||||||||||||||||||| || ||||| ||||||| Sbjct 352 TTTGATCG-TCAGAAC-AAGCTGCGAGAAAGCCGATGTTTAATATGAAACATTAGCTCCT 409 Query 312 AAACGAAAGAGACTAAAGT-GTTTCAAGGACGTCACTAAGTTTATTGAAGACAATGAACA 370 ||||||||||||||||| | | | ||| | ||||||||||||||||||||||||||||| Sbjct 410 AAACGAAAGAGACTAAA-TACTGTGAAGAAAGTCACTAAGTTTATTGAAGACAATGAACA 468 Query 371 ATTCAAAGACATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAAC-GAATGAAGaaaa 429 |||||||||||||||||| ||||||||||||||| |||||||||||| | |||| || Sbjct 469 ATTCAAAGACATGAAGATTGAAGAGGTTTCTTTTACCGCACCCAAACAGC-TGAA-AAGG 526 Query 430 aaaaaGT-CTAA 440 ||||||| |||| Sbjct 527 AAAAAGTTCTAA 538 > AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr4:179022-179513 FORWARD LENGTH=492 Length=492 Score = 355 bits (192), Expect = 2e-97 Identities = 344/416 (83%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 27 ACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGAGATATGTAGAG 86 |||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| Sbjct 19 ACGTTAATTGACTCATACGCTGCACAATGTTGGAAGTGTCTTAAAGTGAGATCTATAGAG 78 Query 87 TCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTCTTTTGAATGCAG 145 || |||||| | || || || ||||| || |||||| | || |||| ||||||||||| Sbjct 79 TCACAAGAAGATTATGAAGAGATTCGTAGTAAAACACTGGAA-AAGTTTTTTGAATGCAA 137 Query 146 GAGCTGTGAAGAACCTGGAGATGTGGATA-TGAACTTTGATTCCCCTGCTGTGCGTTGGT 204 ||| |||||||||||||||||| ||| || ||||||||||||||| | || ||||||||| Sbjct 138 GAGATGTGAAGAACCTGGAGATATGG-TAATGAACTTTGATTCCCTTACTATGCGTTGGT 196 Query 205 TTCAAGATCGA-CATGGTATACCCAAAACCCCTCAAGGGTTGAAGAG-GATTTTGGTTGT 262 |||| ||| || ||| |||||||||||||||||||||| |||||||| | ||||||| || Sbjct 197 TTCAGGAT-GAACATAGTATACCCAAAACCCCTCAAGGTTTGAAGAGAG-TTTTGGTCGT 254 Query 263 TCGA-CGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCTAAACGAAAGA 321 || | || | ||| ||||| ||||||||| || || || ||||||| |||||||| Sbjct 255 GAGAACAAA-CTGCGTGAAAGTCGATGTTTACTATGAATCATTGGCTCCTAGACGAAAGA 313 Query 322 GACT-AAAGTGTTTCAAGGACGTCACTAA-GTTTATTGAAGACAATGAACAATTCAAAGA 379 | | ||| | | | ||||| || | || ||||||||||||||| ||| |||| ||||| Sbjct 314 GGTTTAAA-TCTATAAAGGAAGTTGC-AACGTTTATTGAAGACAAGGAAGAATTTAAAGA 371 Query 380 CATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAACGAATGAAGaaaaaaaaaG 435 ||||| | | ||||||||||||||||||||||||||||| |||| | ||||||| Sbjct 372 CATGACGCTTGAAGAGGTTTCTTTTGCCGCACCCAAACGGCTGAA-ACTAAAAAAG 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21967006313 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5