BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931967
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20816.1 | Symbols: | pseudogene of protein containing meth... 448 3e-125
AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr... 355 2e-97
> AT2G20816.1 | Symbols: | pseudogene of protein containing methyl-CpG-binding
domain | chr2:8962763-8963527 FORWARD LENGTH=538
Length=538
Score = 448 bits (242), Expect = 3e-125
Identities = 371/432 (86%), Gaps = 13/432 (3%)
Strand=Plus/Plus
Query 16 AACCAATGACAACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGA 75
||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||
Sbjct 113 AACCAATGACAACGTTAATTGACTCATACACTGCACAATGTTGAAAGTGTTTCAAAGTGA 172
Query 76 GATAT-GTAGAGTCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTC 133
||||| | |||||| |||||| | ||||| | | || ||| |||| ||| || |||||
Sbjct 173 GATATAG-AGAGTCACAAGAAGAGTACGAAAAGAATCAAAGTAAAACTCCGAAAAAAGTC 231
Query 134 TTTTGAATGCAGGAGCTGTGAAGAACCTGGAGATGTGGATATGAACTTTGATTCCCCTGC 193
||||||||||| ||| |||||| || || ||||||||| | |||||||||||||||||
Sbjct 232 TTTTGAATGCAAGAGATGTGAAAAATCTAGAGATGTGGTTGTGAACTTTGATTCCCCTAT 291
Query 194 TGTGCGTTGGTTTCAAGATCGACATGGTATACCCAAAACCCCTCAAGGGTTGAAGAGGAT 253
||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |
Sbjct 292 TGTGCGTTGGTTTCAGGATGGACATGGTATACCCAACACCCCTCAAGGTTTGAAGAGGGT 351
Query 254 TTTGGTTGTTC-G-ACGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCT 311
|||| | | || | || |||| ||||||||||||||||||| || ||||| |||||||
Sbjct 352 TTTGATCG-TCAGAAC-AAGCTGCGAGAAAGCCGATGTTTAATATGAAACATTAGCTCCT 409
Query 312 AAACGAAAGAGACTAAAGT-GTTTCAAGGACGTCACTAAGTTTATTGAAGACAATGAACA 370
||||||||||||||||| | | | ||| | |||||||||||||||||||||||||||||
Sbjct 410 AAACGAAAGAGACTAAA-TACTGTGAAGAAAGTCACTAAGTTTATTGAAGACAATGAACA 468
Query 371 ATTCAAAGACATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAAC-GAATGAAGaaaa 429
|||||||||||||||||| ||||||||||||||| |||||||||||| | |||| ||
Sbjct 469 ATTCAAAGACATGAAGATTGAAGAGGTTTCTTTTACCGCACCCAAACAGC-TGAA-AAGG 526
Query 430 aaaaaGT-CTAA 440
||||||| ||||
Sbjct 527 AAAAAGTTCTAA 538
> AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr4:179022-179513
FORWARD LENGTH=492
Length=492
Score = 355 bits (192), Expect = 2e-97
Identities = 344/416 (83%), Gaps = 15/416 (4%)
Strand=Plus/Plus
Query 27 ACGTTAATCGACTCATACGCTGCACAATGTTGGAAGTGTCTCAAAGTGAGATATGTAGAG 86
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 19 ACGTTAATTGACTCATACGCTGCACAATGTTGGAAGTGTCTTAAAGTGAGATCTATAGAG 78
Query 87 TCCCAAGAAAAATACGAGGATATTCGAAGCGAAACACCG-AATAAGTCTTTTGAATGCAG 145
|| |||||| | || || || ||||| || |||||| | || |||| |||||||||||
Sbjct 79 TCACAAGAAGATTATGAAGAGATTCGTAGTAAAACACTGGAA-AAGTTTTTTGAATGCAA 137
Query 146 GAGCTGTGAAGAACCTGGAGATGTGGATA-TGAACTTTGATTCCCCTGCTGTGCGTTGGT 204
||| |||||||||||||||||| ||| || ||||||||||||||| | || |||||||||
Sbjct 138 GAGATGTGAAGAACCTGGAGATATGG-TAATGAACTTTGATTCCCTTACTATGCGTTGGT 196
Query 205 TTCAAGATCGA-CATGGTATACCCAAAACCCCTCAAGGGTTGAAGAG-GATTTTGGTTGT 262
|||| ||| || ||| |||||||||||||||||||||| |||||||| | ||||||| ||
Sbjct 197 TTCAGGAT-GAACATAGTATACCCAAAACCCCTCAAGGTTTGAAGAGAG-TTTTGGTCGT 254
Query 263 TCGA-CGAAGCGGCGAGAAAGCCGATGTTTATTACCAAACAGAAGCTCCTAAACGAAAGA 321
|| | || | ||| ||||| ||||||||| || || || ||||||| ||||||||
Sbjct 255 GAGAACAAA-CTGCGTGAAAGTCGATGTTTACTATGAATCATTGGCTCCTAGACGAAAGA 313
Query 322 GACT-AAAGTGTTTCAAGGACGTCACTAA-GTTTATTGAAGACAATGAACAATTCAAAGA 379
| | ||| | | | ||||| || | || ||||||||||||||| ||| |||| |||||
Sbjct 314 GGTTTAAA-TCTATAAAGGAAGTTGC-AACGTTTATTGAAGACAAGGAAGAATTTAAAGA 371
Query 380 CATGAAGATAGAAGAGGTTTCTTTTGCCGCACCCAAACGAATGAAGaaaaaaaaaG 435
||||| | | ||||||||||||||||||||||||||||| |||| | |||||||
Sbjct 372 CATGACGCTTGAAGAGGTTTCTTTTGCCGCACCCAAACGGCTGAA-ACTAAAAAAG 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5