BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931973
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20840.1 | Symbols: | Secretory carrier membrane protein (S... 1465 0.0
> AT2G20840.1 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr2:8971712-8974485 REVERSE LENGTH=1147
Length=1147
Score = 1465 bits (793), Expect = 0.0
Identities = 837/859 (97%), Gaps = 0/859 (0%)
Strand=Plus/Plus
Query 14 CGGTGCAATGTCTCGCTACCAGTCTCCTTCCTTTGATGACGGCGAGGTTAATCCTTTTGC 73
|||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 79 CGGTGCAATGTCTCGCTACCAGTCTCATTCCTTTGATGACGGAGAAATTAATCCTTTTGC 138
Query 74 GAATCCTACAAGTGTTCCAGCTGCAACGTCAAAGCTTTCTCCTCTTCCCCCTGAGCCGTA 133
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GAATCCTACAAGTGTCCCAGCTGCAACGTCAAAGCTTTCTCCTCTTCCCCCTGAGCCGTA 198
Query 134 CGACCGTGGTGCCACAATGGATATTCCTCTAGACTCTGGAAAGGATCTGAAAGCTAAGGA 193
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 199 CGACCGTGGTGCCACAATGGATATTCCTCTTGACTCTGGAAAGGATCTGAAAGCTAAGGA 258
Query 194 GAAGGAACTCCGGGAAAAAGAGGCTGAACTGAAGAGGCGGGAGCAGGAAATCAAGCGGAA 253
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 259 GAAGGAACTCCGGGAAAAGGAGGCTGAATTGAAGAGGCGGGAGCAGGAAATCAAGCGGAA 318
Query 254 AGAAGATGCTATAGCACAGGCTGGAATTGTGATAGAAGAGAAAAATTGGCCACCGTTTTT 313
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 319 AGAAGATGCTATAGCACAGGCCGGAATTGTGATAGAAGAGAAAAACTGGCCACCGTTTTT 378
Query 314 TCCTCTCATCCATCATGACATTTCAAATGAGATACCCATCCATCTGCAGAGAATCCAATA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TCCTCTCATCCATCATGACATTTCAAATGAGATACCCATCCATCTGCAGAGAATCCAATA 438
Query 374 TGTTGCTTTCACATCAATGCTGGGTCTTGTGGTGTGCCTGTTATGGAACATTGTTGCAGT 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 439 TGTTGCTTTCACATCAATGCTGGGTCTTGTGGTGTGCCTGTTATGGAACATTGTCGCAGT 498
Query 434 TACCACAGCGTGGATTAAGGGAGAAGGTCCAACAATATGGTTTCTAGCTATTATCTATTT 493
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TACTACTGCGTGGATTAAGGGAGAAGGTCCAACAATATGGTTTCTAGCTATTATCTATTT 558
Query 494 CATTTCGGGGGTTCCTGGAGCATATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG 553
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 559 CATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG 618
Query 554 GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGTTTCACATAGCGTT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GACTGATAGTGCTCTGAAGTTTGGGTGGTTTTTCTTCACGTATCTGTTTCACATAGCGTT 678
Query 614 TTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTCAAGGGAAAATCGTTGACAGGAAT 673
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 679 TTGTGTGTTTGCGGCGGTGGCTCCTCCAATTATCTTCAAGGGAAAATCGCTGACAGGAAT 738
Query 674 ATTGCCGGCGATCGACGTATTGAGTGGGAATATCTTGGTCGGGATATTCTACTTCATTGG 733
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 739 ATTGCCGGCGATCGACGTATTGAGTGGGAATATCTTGGTCGGGATATTTTACTTCATTGG 798
Query 734 GTTTGGGTTCTTCTGTCTGGAGTCACTCGTGAGCATCTGGGTTATTCAGCAAGTGTACAT 793
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 799 GTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGCAAGTGTACAT 858
Query 794 GTACTTCAGAGGGAGCGGGAAAGCTGCAGAGATGAAGCAGGAGGCAACAAGACGAGCAAT 853
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 859 GTACTTCAGGGGGAGCGGGAAAGCAGCAGAGATGAAGCAGGAGGCCACAAGACGAGCAAT 918
Query 854 GATGGCAGCTCTCTGACCA 872
|||||||||||||||||||
Sbjct 919 GATGGCAGCTCTCTGACCA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5