BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931978
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20860.1 | Symbols: LIP1 | lipoic acid synthase 1 | chr2:897... 1873 0.0
> AT2G20860.1 | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979579-8981226
FORWARD LENGTH=1425
Length=1425
Score = 1873 bits (1014), Expect = 0.0
Identities = 1162/1232 (94%), Gaps = 15/1232 (1%)
Strand=Plus/Plus
Query 3 TTTTTCTCACGACGATTGAGATGCATTCGCGCTCCGCCCTAG-TCTCCCGATTCCTCCGT 61
||||||||| |||| ||||||||||||||||||||| ||| | ||| |||||||||||
Sbjct 38 TTTTTCTCAGGACGTTTGAGATGCATTCGCGCTCCG-CCTTGCTCTATAGATTCCTCCGT 96
Query 62 CCGGCGTCGAGATGCTTCTCCTCTTCCTCGCCGGTAACTCCCGTAACCGTAACGCAATCT 121
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 97 CCGGCGTCGAGATGCTTCTCCTCTTCCTCGGCTGTAACTCCGGTCACCGTAACGCAATCT 156
Query 122 CCCAAGAGTCTCGAGGCTCTTCGAGCGCGGCTGGCGAATGAGTCGCCTTCCCTAACTGAT 181
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 157 CCCAAGAGTCTCGAGGCTCTTCGAGCTCGGCTGGCGAATGAGTCGCCTTCCCTAACCGAT 216
Query 182 TTCATCCACGGCGATACCTATTCCGTGGAGGTTGGAACCAAGAAGAAACCTCTCCCGAAA 241
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 217 TTCATCCACGGCGATACCTATTCGGTGGAAGTTGGAACCAAAAAGAAACCTCTCCCGAAA 276
Query 242 CCTAAATGGATGAAGGAATCTATTCCCGGCGGCGAGAGGTATGTCCAGATCAAGAAGAAA 301
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 277 CCTAAATGGATGAAGGAATCAATTCCCGGCGGCGAGAGATATGTCCAGATCAAGAAGAAA 336
Query 302 TTGAGAGACCTTAAGCTTCACACCGTCTGCGAGGAAGCTAAATGTCCCAATCTCGGTGAG 361
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 337 TTGAGAGACCTTAAGCTTCACACCGTCTGCGAGGAAGCGAAATGTCCCAATCTCGGTGAG 396
Query 362 TGCTGGTCTGGTGGCGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGACACG 421
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 397 TGCTGGTCTGGTGGTGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGATACA 456
Query 422 TGTACACGCGGCTGCAGGTTTTGTAATGTGAAGACTTCGCGTACACCTCCACCGCCTGAT 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 457 TGTACACGCGGCTGCAGGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGAT 516
Query 482 CCAAATGAACCTAACAATGTGGCTCAAGCAATTGCATCTTGGGGGGTAGATTATGTGGTG 541
|||||||||||||||||||||||| |||||||||| || |||||||| |||||||| |||
Sbjct 517 CCAAATGAACCTAACAATGTGGCTGAAGCAATTGCTTCCTGGGGGGTTGATTATGTTGTG 576
Query 542 ATCACCAGTGTAGATCGAGATGATTTACCTGATCAAGGGAGTGGCCATTTTGCTGAAACA 601
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 577 ATCACCAGTGTAGATCGAGATGATTTACCTGATCAAGGGAGTGGTCATTTTGCTGAAACT 636
Query 602 GTACAGAGATTGAAAGTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGTTCCTGATTTC 661
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGTTCCTGATTTC 696
Query 662 CGTGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGTCCTT-GCTCA 720
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 697 CGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGT-CTTAGCTCA 755
Query 721 CAACATTGAGACTGTTGAAGAGCTTCAGAGTTTTGTGCGGGATCATCGTGCTAACTTTAA 780
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 756 CAACATTGAGACAGTTGAAGAGCTTCAGAGTTTTGTGCGGGACCATCGTGCTAACTTTAA 815
Query 781 GCAGTCACTGGATGTGCTTAGGATGGCTAAGGAGCATGCTCCTGCTGGCACCTTAACAAA 840
||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 816 GCAGTCATTGGATGTGCTTAGGATGGCTAAGGAGTATGCACCTGCAGGCACCTTAACAAA 875
Query 841 GACCTCTGTAATGCTGGGATGTGGTGAGACTCCTGATCAAGTGGTTAAGACAATGGAGAA 900
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 876 GACTTCTGTAATGCTGGGATGTGGAGAGACCCCTGATCAAGTGGTTAAGACAATGGAGAA 935
Query 901 AGTCAGAGCAGCAGGGGTTGACGTTATGACTTTTGGTCAATATATGCGACCGTCTAAACG 960
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 936 GGTGAGAGCAGCAGGGGTTGACGTTATGACATTTGGCCAATATATGCGACCATCTAAACG 995
Query 961 GCACATGCCAGTAGCTGAGTACGTGACACCAGATGCCTTTGAGAGGTATCGGCTTCTTGG 1020
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 996 CCACATGCCAGTAGCTGAGTACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGG 1055
Query 1021 CATGGAAATGGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CATGGAAATGGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGC 1115
Query 1081 GGGAGAGTACTACATAAAGTCGATGATAGACGCTGATCGAGTTGCTTCTCCTTCTACCTC 1140
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||
Sbjct 1116 GGGAGAGTACTACATAAAGTCGATGATAGAAGCCGATCGAGTGGCTTCTCCTTCTACATC 1175
Query 1141 CCCGTAGATACTCATTCAAGATTACGCTATGATATGTGAATTCTTTCACTTTATTGCTTT 1200
||||||||| | | || | || || |||||||||||||||||||||||||||||
Sbjct 1176 CCCGTAGAT--T-A--CAC-ACTA---TA--ATATGTGAATTCTTTCACTTTATTGCTTT 1224
Query 1201 GTTTCTTCTGCGGGTAAGCCATTCACAACACT 1232
||||||||||||||||||||||||||||||||
Sbjct 1225 GTTTCTTCTGCGGGTAAGCCATTCACAACACT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5