BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931979

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20870.1 | Symbols:  | cell wall protein precursor, putative...   706    0.0  


> AT2G20870.1 | Symbols:  | cell wall protein precursor, putative 
| chr2:8981988-8982712 REVERSE LENGTH=725
Length=725

 Score =  706 bits (382),  Expect = 0.0
 Identities = 428/450 (95%), Gaps = 3/450 (1%)
 Strand=Plus/Plus

Query  16   AAA-TAATGGCTTCTTCACTTATCACATCCGCAGTCATTGTCGTGCTTTTAAGCCTACTG  74
            ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct  46   AAATTAATGGCTTCTTCACTTATCACCTCCGCAGTCATTGTCGTGGTTTTAAGCCTAGTG  105

Query  75   CTTGGATCTGCAGAGCAAGTGAGAGGACTACGTCACGTTCCCAAGTCCCCTAAGACCACT  134
            |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  106  CTTGGATCTGTAGAGCAAGTGAGTGGACTACGTCACGTTCCCAAGTCCCCTAAGACCACT  165

Query  135  GATGTCAAACACCCTGACTTTCTTGTAACCATTGGGCCCAAACCAACTATTCTTAT-CCC  193
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct  166  GATGTCAAACACCCTGACTTTCTTGTAACCATTGAGCCCAAACCAACTATTCTCATTCCC  225

Query  194  TGGTGTTGGAAGGTTCTTGCTTCCTCCCAAATGTAAGAAGCCGTTCTACCCTTACAATCC  253
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  226  -GGTGTTGGAAGGTTCTTGCTTCCTCCCAAATGCAAGAAGCCGTTCTACCCTTACAATCC  284

Query  254  TGTCACCGGAGCTCCTCTTACTGGTGGGGGAATCCCATCATATAATGGTGGCCAAGGGGC  313
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  285  TGTCACCGGAGCTCCACTTACTGGTGGGGGAATCCCATCATATAATGGTGGACAAGGGGC  344

Query  314  GGGACCTCGTACCCAACTCCCTGGTGGCGATGATACGCTTGTCCCAAACCCTGGTTTTGA  373
             |||||||  ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  345  CGGACCTCACACCCAACTCCCTGGTGGCGATGATACGCTTGTCCCAAACCCCGGATTTGA  404

Query  374  AGCTCCAACCCCGACCATTGGAGCTGGCGCAGGAAGCAACGGCCAAGTTCCACCAGTGCC  433
            ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  405  AGCGCCAACCCCGACCATTGGAGCTGGCACCGGAAGCAACGGCCAAGTTCCACCAGTGCC  464

Query  434  ACTACCCTGAGTATTATTAATTTGTCAACA  463
            ||||||||||||||||||||| ||||||||
Sbjct  465  ACTACCCTGAGTATTATTAATCTGTCAACA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5