BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg931980

Length=359
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20875.1 | Symbols: EPF1 | epidermal patterning factor 1 | c...   516    6e-146


> AT2G20875.1 | Symbols: EPF1 | epidermal patterning factor 1 | 
chr2:8983074-8983612 REVERSE LENGTH=453
Length=453

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 335/361 (93%), Gaps = 7/361 (2%)
 Strand=Plus/Plus

Query  1    ACCACTTACGATAATATATCATGAAGtctcttcttctccttgcctttttcctctctttct  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  14   ACCACTTGCGATAATATATCATGAAGTCTCTTCTTCTCCTTGCCTTTTTCCTCTCTTTCT  73

Query  61   tcttcggctctctcttGGCAAGGCATTTACCAACACCCTCCCATCCAAGTCATCATCATG  120
            |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  74   TCTTTGGCTCTCTCTTGGCTAGGCATTTACCAACATCCTCCCATCCAAGTCATCATCATG  133

Query  121  TGGGAATGACCGGGACATTAATGAAGCGTCAGAGGAGGAGGCCGGACACGGTGCAAGTGG  180
            | |||||||||||| ||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct  134  TAGGAATGACCGGGGCATT---GAAGCGTCAGAGGAGGAGGCCGGACACGGTGCAGGTGG  190

Query  181  CTGGGTCTAGGTTGCCAGACTGCTCACACGCGTGTGGCTCATGCTCCCCATGCAGACTTG  240
            ||||||||||||||||||| |||||||||||||||||||| || || |||||| | ||||
Sbjct  191  CTGGGTCTAGGTTGCCAGATTGCTCACACGCGTGTGGCTCGTGTTCTCCATGCCGTCTTG  250

Query  241  TGATGGTTAGCTTTGTGTGTGCATC-GCTCCAAGAGGCTGAGACTTGTCCAATGGCTTAC  299
            ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| 
Sbjct  251  TGATGGTTAGCTTTGTGTGTGCATCCG-TCGAAGAGGCTGAGACTTGTCCAATGGCTTAT  309

Query  300  AAGTGCATGTGCAACAACAAGTCCTACCCCGTCCCATGATCAGCCT-TTCCTACACTTAT  358
            || |||||||||||||| ||||||||||| ||||| |||||||||| ||| |||||||||
Sbjct  310  AAATGCATGTGCAACAATAAGTCCTACCCTGTCCCTTGATCAGCCTCTTC-TACACTTAT  368

Query  359  T  359
            |
Sbjct  369  T  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16839695915


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5