BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931981
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20880.1 | Symbols: | Integrase-type DNA-binding superfamil... 1219 0.0
> AT2G20880.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:8985973-8987263 FORWARD LENGTH=1291
Length=1291
Score = 1219 bits (660), Expect = 0.0
Identities = 920/1036 (89%), Gaps = 55/1036 (5%)
Strand=Plus/Plus
Query 18 TCTATGGCTACAGCTAAGAACAAGGGAAAATCCATCAGGAG-CCTTGGTACAAATGAATC 76
||||||||||| |||||||||||||||||||| |||||| | ||||||||| | |||| |
Sbjct 78 TCTATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGG-GTCCTTGGTACCAGTGAAGC 136
Query 77 --AG----A-GA--A-A---A--TGGAGGAGGAGTTCCAGTTTAGTAGCGGCAAGTATAA 121
|| | || | | | |||||||||||||||||||||||||||||||||||||
Sbjct 137 AGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTCCAGTTTAGTAGCGGCAAGTATAA 196
Query 122 AGATTCGGGTTCTGGCTCGGACATGTGGTTAGGAGAAGCTTCCTCTACGTC-CCAAAGAA 180
|||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 197 AGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCC-AAGAA 255
Query 181 GTCTTAGGAAGACTAGGACCTTTGACCGACATAATCCTTATCTC----CTTC--A-GC-- 231
|||||||||||||||| |||||||||||||||||||| |||||| |||| | ||
Sbjct 256 GTCTTAGGAAGACTAGAACCTTTGACCGACATAATCCCTATCTCGTATCTTCTTATGCTA 315
Query 232 C-GC-CA-CCAACAACTACATGCTCTGTCTCTTCTTCGAGTGTCGCTTTTCCCTTTTCCC 288
| | || || |||| ||| || | | | || |||| |||||||||||| ||
Sbjct 316 CTCCTCAGCCGCCAACAACA---ACT-AC-ATGC-TC---TGTCTCTTTTCCCTTTTACC 366
Query 289 TCGCTCCAGCGATTCAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAA 348
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCCCTCCAGCGATTCAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAA 426
Query 349 GACAGCAACAAATGATCTCGTTTGGTCCTCAACTACAGGTGCAGCCATAT-TT------- 400
|||||||||||||||||||||||| |||||||| ||||||||| |||||| ||
Sbjct 427 GACAGCAACAAATGATCTCGTTTGATCCTCAACAACAGGTGCAACCATATGTTGCACAAC 486
Query 401 AGTA-CAACAACAGCAACATATGTTGCAGTACTGGAGAGACATAT-TGAAGTTGAGCCCG 458
|| | |||||||| |||||| | |||||||||||||||||||| | ||||| |||| |||
Sbjct 487 AGCAGCAACAACAACAACATCTATTGCAGTACTGGAGAGACAT-TCTGAAGCTGAGTCCG 545
Query 459 AGCGGAAGAATGATGATGATGAACATGTTAAGACAAGAAAGTGATCTGCCACTGACGAGG 518
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 546 AGCGGAAGAATGATGATGATGAACATGTTAAGACAAGAAAGCGATCTGCCACTGACGAGG 605
Query 519 CCGCCCATTCAACCATTCAGTGCCACCAAGCTATATAGAGGGGTCAGACAACGCCACTGG 578
|| || ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 606 CCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGG 665
Query 579 GGAAAATGGGTTGCTGAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACA 638
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GGAAAATGGGTTGCCGAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACA 725
Query 639 TTCGATACAGCAGAGGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGAGGGGT 698
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGAGGGGA 785
Query 699 GAGACCGCCAGGCTCAATTTTCCC-GAGCTTTTTCTCAATAAACAAGAGTCAACTCCGGT 757
|||||||| |||||||| |||||| || ||||||||||||||||||||| ||||||| ||
Sbjct 786 GAGACCGCTAGGCTCAA-TTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGT 844
Query 758 GCATCAGAAACAATGCGAGACGGCGACTACTAGTGAAGAGGCAAGCGGAAGAAGAGAAGA 817
||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| |||| ||
Sbjct 845 GCATCAGAAACAATGTGAGACGGGGACTACTAGTGAAGACTCAAGCAGAAGAGGAGAGGA 904
Query 818 TGATTCAAGCGCGACATTGGCAGTGGGAAGGGTGAGTGAGGAGACAGGTTGGGCTGAGGC 877
|||||| ||| || |||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 905 TGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGC 964
Query 878 ATGGTTCAATGCAATTCCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCA 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 ATGGTTCAATGCAATTCCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCA 1024
Query 938 CTTTCCCATTTCTAACCACAAGGACGATCATGATCCCC-CACAAAACTCTTCTTCTGATA 996
|||||||||||||||||| |||||||||| ||| | || |||||||||||||||||||||
Sbjct 1025 CTTTCCCATTTCTAACCATAAGGACGATCTTGA-CGCCACACAAAACTCTTCTTCTGATA 1083
Query 997 CAATTTAGAACCTTTG 1012
|||||||| |||||||
Sbjct 1084 CAATTTAGGACCTTTG 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5