BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931982
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction ce... 1452 0.0
> AT2G20890.1 | Symbols: PSB29, THF1 | photosystem II reaction
center PSB29 protein | chr2:8987666-8989416 FORWARD LENGTH=1251
Length=1251
Score = 1452 bits (786), Expect = 0.0
Identities = 896/950 (94%), Gaps = 4/950 (0%)
Strand=Plus/Plus
Query 1 CTCTTTCTCTCTTCAGTTTCGCAATGGCTGCAACTGCAATCTCTTCCCTTTCCTTACCAG 60
||||||||| ||||| ||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct 95 CTCTTTCTCACTTCAATTTAGCGATGGCTGCAACTGCAATCTCTTCTCTTTCCTTCCCAG 154
Query 61 CGTTGGGTCAATCGGACAAGATCTCCAATTTCGCACCTTCTCGTCCTCTCGCCTCCACAA 120
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 155 CTTTGGGTCAATCGGACAAGATCTCCAATTTCGCATCTTCTCGTCCTCTCGCCTCCGCAA 214
Query 121 TTCGCATCTGCACCAAGTCTTCTCGCCACTCTTTGACTTCGCGTTCCACTTCGAGATCTC 180
||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||
Sbjct 215 TTCGCATCTGCACAAAGTTTTCTCGCCTTTCTTTGAATTCGCGTTCCACTTCGAAATCTC 274
Query 181 TTATTCACTGCATGTCCACTGTTA---CCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 237
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 275 TTATTCACTGCATGTCCAATGTTACCGCCGATGTGCCTCCTGTATCAGAGACAAAGTCGA 334
Query 238 ATTTCCTAAAAGCTTACAAGCGACCTATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 297
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 335 AATTCCTAAAAGCTTACAAGCGACCCATCCCGAGTATCTACAACACGGTTTTGCAGGAGC 394
Query 298 TCATTGTACAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTACGATCCTGTTTTTG 357
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 395 TCATTGTCCAGCAGCATTTGATGAGGTATAAGAAGACTTATCGTTATGATCCTGTTTTTG 454
Query 358 CACTTGGCTTTGTCACTGTGTATGATCAGCTCATGGAAGGATATCCGAGCGATCAAGATC 417
| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 455 CCCTTGGATTTGTCACTGTATATGATCAGCTCATGGAAGGATATCCGAGTGATCAAGACC 514
Query 418 GAGATGCCATTTTTAAAGCTTACATAGAAGCCTTGAATGAGGATCCTAAACAATACCGAA 477
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 515 GAGATGCCATTTTTAAGGCTTACATTGAAGCCTTGAATGAGGATCCTAAGCAATACCGAA 574
Query 478 TTGATGCTCAGAAGATGGAGGAATGGGCAAGAAGTCAGACTTCTGCTTCACTAGTTGACT 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 575 TTGATGCTCAGAAGATGGAGGAATGGGCACGAAGTCAGACTTCTGCTTCACTAGTTGACT 634
Query 538 TTTCCTCTAGAGAAGGAGAAATTGAAGCACTTCTTAAGGACATTGCAGGAAGAGCTGGGA 597
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 635 TTTCCTCTAAAGAAGGAGATATTGAAGCAGTTCTTAAGGACATTGCAGGAAGAGCTGGTA 694
Query 598 GTAAGGAGGGATTTAGTTACAGTAGGTTCTTCGCCGTTGGGCTCTTTCGTTTACTTGAGC 657
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 695 GTAAGGAGGGGTTTAGTTACAGCAGGTTCTTCGCTGTTGGGCTCTTTCGTTTGCTTGAGC 754
Query 658 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTGCAAGTGCTACTGATCCAACTGTCTTGGACAAGCTTTGTGCATCCCTAAATATCAACA 814
Query 718 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTGTCAAAGCTTGTCCAAG 777
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 815 AGAAAAGCGTGGATCGGGACCTGGATGTGTATCGTAACCTGCTTTCAAAGCTTGTCCAAG 874
Query 778 CCAAGGAATTGCTTAGGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGGGAGAGAGCCG 837
||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 875 CCAAGGAATTGCTTAAGGAGTATGTCGAGAGGGAGAAGAAGAAGCAAGGAGAAAGAGCCC 934
Query 838 AATCCCAGAAGGCTAATGAAACAATCTCCAAGTGTCTTGGAGATACTCTATATAACCCAT 897
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 935 AATCTCAGAAGGCTAACGAAACAATCTCCAAGTGTCTGGGAGATACTCTATATAACCCAT 994
Query 898 CTTTCTTGGTTGAATGGAAATAGTAAAAAATCAATTGTGACtt-tttttt 946
|||||||||||||| |||||| || ||||||| ||||||||| ||||||
Sbjct 995 CTTTCTTGGTTGAACGGAAATCTTAGAAAATCATTTGTGACTTCTTTTTT 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5