BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931988
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT3G41979.1 | Symbols: | rRNA | chr3:14199753-14199916 FORWARD... 298 8e-80
AT2G01020.1 | Symbols: | rRNA | chr2:5782-5945 FORWARD LENGTH=164 298 8e-80
AT2G01021.1 | Symbols: | unknown protein; Has 30201 Blast hits... 178 1e-43
> AT3G41979.1 | Symbols: | rRNA | chr3:14199753-14199916 FORWARD
LENGTH=164
Length=164
Score = 298 bits (161), Expect = 8e-80
Identities = 161/161 (100%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 63
Query 61 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 123
Query 121 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 164
> AT2G01020.1 | Symbols: | rRNA | chr2:5782-5945 FORWARD LENGTH=164
Length=164
Score = 298 bits (161), Expect = 8e-80
Identities = 161/161 (100%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA 63
Query 61 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC 123
Query 121 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA 164
> AT2G01021.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6571-6672
FORWARD LENGTH=102
Length=102
Score = 178 bits (96), Expect = 1e-43
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 787 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 846
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
Query 847 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 888
||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5