BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg931990
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT3G41768.1 | Symbols: | rRNA | chr3:14197677-14199484 FORWARD... 968 0.0
AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD LENGTH=... 968 0.0
AT2G01021.1 | Symbols: | unknown protein; Has 30201 Blast hits... 178 1e-43
> AT3G41768.1 | Symbols: | rRNA | chr3:14197677-14199484 FORWARD
LENGTH=1808
Length=1808
Score = 968 bits (524), Expect = 0.0
Identities = 532/536 (99%), Gaps = 0/536 (0%)
Strand=Plus/Plus
Query 1 TGGGATGGGTCGGCCGGTCCGCCTTTGGTGTGCACCGGTCGGCTTGTCCCTTCGGTCGGT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 644 TGGGATGGGTCGGCCGGTCCGCCTTTGGTGTGCATTGGTCGGCTTGTCCCTTCGGTCGGC 703
Query 61 GATACGCTCCTGGTCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GATACGCTCCTGGTCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAAT 763
Query 121 TAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 764 TAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGAT 823
Query 181 TTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGG 883
Query 241 CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGA 943
Query 301 AAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGAT 1003
Query 361 CAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTT 1063
Query 421 ATAGGACTCCGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ATAGGACTCCGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGG 1123
Query 481 TCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT 1179
> AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD LENGTH=1808
Length=1808
Score = 968 bits (524), Expect = 0.0
Identities = 532/536 (99%), Gaps = 0/536 (0%)
Strand=Plus/Plus
Query 1 TGGGATGGGTCGGCCGGTCCGCCTTTGGTGTGCACCGGTCGGCTTGTCCCTTCGGTCGGT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 644 TGGGATGGGTCGGCCGGTCCGCCTTTGGTGTGCATTGGTCGGCTTGTCCCTTCGGTCGGC 703
Query 61 GATACGCTCCTGGTCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GATACGCTCCTGGTCTTAATTGGCCGGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAAT 763
Query 121 TAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 764 TAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGAT 823
Query 181 TTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGG 883
Query 241 CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGA 943
Query 301 AAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGAT 1003
Query 361 CAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTT 1063
Query 421 ATAGGACTCCGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ATAGGACTCCGCTGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGG 1123
Query 481 TCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCT 1179
> AT2G01021.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6571-6672
FORWARD LENGTH=102
Length=102
Score = 178 bits (96), Expect = 1e-43
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 825 ATGCGTCCCGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCAATCGATTCGGGGCGTGG 884
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGCGTCCTGGTCGGATGCGGAACGGAGCAATCCGGTCCGCCGATCGATTCGGGGCGTGG 60
Query 885 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 926
||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACCGACGCGGATTACGGTGGCGGCCTAAGCCCGGGCTTTTGA 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5