BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932019

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20930.1 | Symbols:  | SNARE-like superfamily protein | chr2...   756    0.0  


> AT2G20930.1 | Symbols:  | SNARE-like superfamily protein | chr2:9000616-9001737 
REVERSE LENGTH=678
Length=678

 Score =  756 bits (409),  Expect = 0.0
 Identities = 447/465 (96%), Gaps = 4/465 (1%)
 Strand=Plus/Plus

Query  1    GAGATCTGCAAAGGAGAGAAGATGATCGTATGCGTCGCCGTCGTCGGCCACCAGAACAAT  60
            ||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  63   GAGATCTGC-AAGG-GAGAAGATGATCGTTTGCGTCGCCGTCGTCGGCCACCAGAACAAT  120

Query  61   CCGCTTTACATACAAAGCTTCACGGATGCTGACGATGCTCTCAAGCTCCACCACATCGTT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  CCGCTTTACATACAAAGCTTCACGGATGCTGACGATGCTCTCAAGCTCCACCACATTGTT  180

Query  121  CATTGCTCTCTCGATGTCATCGAAGAGCGAGTGAACAATCCAAAAAAGTCTGGTACAACT  180
            |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  181  CATTGCTCCCTTGATGTCATCGAAGAGCGAGTGAACAATCCGAAAAAGTCTGGTACAACA  240

Query  181  CTGAACGAGGCTTTTCTTGGCCTGCTCTATCCTACTGTGAACTACAAAGTCTATGGTTAC  240
            ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct  241  CTGAACGAGGCTTTTCTTGGCTTGCTCTATCCTACTGTGAACTACAAAGTGTATGGTTAC  300

Query  241  TTGACTAATACCAAAGTTAAATTTATATTGGTCACTACTGATTTGGATGTTAGAGACACC  300
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTGACTAATACCAAGGTTAAATTTATATTGGTCACTACTGATTTGGATGTTAGAGACACC  360

Query  301  GATGTGAGAAGTTTCTTCAGGAAGTTCCATGCTGCCTACGTTGATGCAGTCTCAAACCC-  359
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  361  GATGTGAGAAGTTTCTTCAGGAAGTTCCATGCTGCTTACGTTGATGCAGTCTCAAACCCC  420

Query  360  TTTCCATGTCCCTGGCAAAAAGATAACCTCAAGAACCTTTGCACAAACTGTAAGCAACAT  419
            |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  421  TTTC-ATGTCCCTGGCAAAAAGATAACCTCGAGAACCTTTGCGCAAACTGTAAGCAACAT  479

Query  420  CGTTGGATCGTACGGTTTGAACTGACCCTCTCTTATTAGTTGCTT  464
            ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  480  CGTTGGATCGTACGGTTTGAACTGACCTTCTCTTATAAGTTGCTT  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5