BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932020

Length=431
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20940.1 | Symbols:  | Protein of unknown function (DUF1279)...   691    0.0  


> AT2G20940.1 | Symbols:  | Protein of unknown function (DUF1279) 
| chr2:9002032-9002701 REVERSE LENGTH=670
Length=670

 Score =  691 bits (374),  Expect = 0.0
 Identities = 403/417 (97%), Gaps = 1/417 (0%)
 Strand=Plus/Plus

Query  7    AAATCTCCGATTTCGATGGCGACTCGGCTCAAGGAGATTGTGAAGAAGTACGGAAAAGTC  66
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  34   AAATCACCGATTTCGATGGCGACTCGGCTCAAGGAGATTGTGAAGAAGTACGGAAAAGTC  93

Query  67   GCGCTTGGAGTCCATTTCTCGGTCTCCGGCGTCTCAATTAGTGGATTTTACATCGCGATC  126
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  94   GCGCTTGGAGTCCATTTCTCGGTCTCCGGCGTCTCAATTAGTGGATTCTACATCGCGATC  153

Query  127  AAGAACAACGTGGATGTCGAATCGCTCTTGGAGAAGTACCAAATCCCTTGGTTCTCCAAC  186
            ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct  154  AAGAACAACGTCGATGTCGAATCGCTCTTGGAGAAATACCAAATCCCATGGTTCTCCAGC  213

Query  187  AAGGAAAACCCTAACCCTAGCCTCGATTTGAAGATGGAAGAGGAAGGTTCGGGTACGAGC  246
            ||||||||||||||||||||||||||||| ||| |||||||| ||||||| | |||||||
Sbjct  214  AAGGAAAACCCTAACCCTAGCCTCGATTTAAAGCTGGAAGAGCAAGGTTCCGTTACGAGC  273

Query  247  GATAACAAGACGAAACAGCTTGCGAAATCGGCCGGCGGAGCCCTAGCGTTGGCGGTTTTG  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  GATAACAAGACGAAACAGCTTGCGAAATCGGCCGGCGGAGCCCTAGCGTTGGCGGTTTTG  333

Query  307  TGCAATAAGGCGCTGTTTCCGATCAGAGTTCCGATCACGATGGCGTTGACTCCTCCAATC  366
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  334  TGCAATAAGGCGCTTTTTCCGATCAGAGTTCCGATCACGATGGCGTTGACTCCTCCAATC  393

Query  367  GCTAGATTCCTCAGGCAGAGGAAGATCCTCAAAACCGGCCAATGACTCTTTTCTCTC  423
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  394  GCTAGATTCCTCAGGCAGAGGAAGATCCTCAAAACCGGCCAATGACTATTT-CTCTC  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20458973843


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5