BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932026
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21050.1 | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:903... 2455 0.0
AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203... 793 0.0
> AT2G21050.1 | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034090-9036636
FORWARD LENGTH=1848
Length=1848
Score = 2455 bits (1329), Expect = 0.0
Identities = 1427/1476 (97%), Gaps = 0/1476 (0%)
Strand=Plus/Plus
Query 15 AGAGAGATGGAGAACGGTGAGAAAGCAGCTGAGACTGTTGTTGTTGGGAACTATGTTGAG 74
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 194 AGAGAGATGGAGAACGGTGAGAAAGCAGCTGAGACTGTCGTTGTTGGGAACTATGTTGAG 253
Query 75 ATGGAGAAGGATGGTAAAGCTTCAGACATCAAATCTAAGCTCTCTGACATGTTTTGGCAT 134
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 254 ATGGAGAAGGATGGTAAAGCTTTAGACATCAAATCTAAGCTATCTGACATGTTTTGGCAT 313
Query 135 GGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTG 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTG 373
Query 195 TTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGGATTCTGTTTCAGCTC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTGACACTGCCATACTCGTTCTCACAGCTGGGGATGCTCTCAGGGATTCTGTTTCAGCTC 433
Query 255 TTCTATGGCATCTTAGGTAGTTGGACTGCTTACCTCATCAGCATTCTTTATGTTGAATAC 314
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 434 TTTTATGGCATCTTAGGTAGTTGGACTGCTTACCTCATCAGTATTCTCTATGTTGAATAC 493
Query 315 AGAACTAGAAAGGAGAGAGAGAAAGTTAACTTCAGAAACCATGTCATTCAGTGGTTTGAG 374
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AGAACCAGAAAGGAAAGAGAGAAAGTTAACTTCAGAAACCATGTCATTCAGTGGTTTGAG 553
Query 375 GTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCTTTTAACTGCACA 434
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 554 GTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACC 613
Query 435 TTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATA 673
Query 495 AATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACA 733
Query 555 GTCTTCATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACC 614
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GTCTTTATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACC 793
Query 615 ACTTACACTGCTTGGTACCTCACCATTGCCTCCATCCTCCATGGACAGGTACAAGGAGTG 674
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 794 ACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGGTAGAAGGAGTG 853
Query 675 AAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTAC 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 AAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTAC 913
Query 735 ACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCGCAGAAG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 914 ACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCTCAGAAG 973
Query 795 TTCAAGTCCATATACCTCTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCG 854
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TTCAAGTCCATATACCTGTTTGCAACACTCTACGTGCTGACGCTAACGCTGCCTTCTGCG 1033
Query 855 TCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAACCATTCAAACGCATTTGCTCTT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAACCATTCAAACGCATTTGCTCTT 1093
Query 915 CTCCCAAAGAATCTTTACCGTGACTTTGCAGTTGTGCTTATGCTCATCCATCAGTTCATT 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 CTCCCAAAGAATCTTTACCGTGACTTTGCAGTTGTGCTTATGCTCATCCATCAGTTCATC 1153
Query 975 ACCTTTGGTTTTGCTTGCACGCCACTCTACTTTGTGTTGGAGAAGCTTATAGGGATGCAT 1034
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1154 ACCTTTGGTTTTGCTTGCACGCCACTCTACTTTGTGTGGGAGAAGCTAATAGGGATGCAT 1213
Query 1035 GAGTGCCGAAGCATGTGTAAACGAGCTGCCGCGAGGCTTCCTGTTGTTATACCCATTTGG 1094
|||||| ||||||||||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct 1214 GAGTGCAGAAGCATGTGTAAACGAGCCGCTGCGAGGCTCCCTGTCGTTATACCCATTTGG 1273
Query 1095 TTTCTTGCTATCATATTTCCTTTCTTCGGTCCCATTAACTCAACTGTTGGATCTCTACTC 1154
||||||||||||||||| || ||||| ||||||||||||||||| || |||||||| |||
Sbjct 1274 TTTCTTGCTATCATATTCCCGTTCTTTGGTCCCATTAACTCAACCGTAGGATCTCTTCTC 1333
Query 1155 GTCAGCTTCACTGTCTACATCATCCCTGCACTAGCTCATATCTTCACCTTCCGCTCCTCC 1214
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 1334 GTCAGCTTCACTGTCTACATCATCCCAGCACTAGCTCACATCTTCACCTTCCGCTCATCC 1393
Query 1215 GCCGCACGTGAAAATGCCGTGGAGCAGCCCCCGAGGTTTCTAGGACGGTGGACTGGGGCT 1274
|||||||||||||| || ||||||||||| || |||||||||||||| |||||||||||
Sbjct 1394 GCCGCACGTGAAAACGCTGTGGAGCAGCCACCAAGGTTTCTAGGACGATGGACTGGGGCA 1453
Query 1275 TTCACCATCAACGCCTTCATAGTTGTGTGGGTGTTCATTGTTGGATTCGGGTTCGGTGGT 1334
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 TTCACGATCAATGCCTTCATAGTTGTGTGGGTGTTCATTGTTGGATTCGGGTTCGGTGGT 1513
Query 1335 TGGGCTAGTATGATCAATTTTGTTCACCAAATTGACACCTTTGGCCTCTTCACCAAATGC 1394
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1514 TGGGCTAGTATGATCAATTTTGTACACCAGATTGACACCTTTGGCCTCTTCACCAAATGC 1573
Query 1395 TACCAATGCCCTCCACCGGTTATGGCCTCACCTCCTCCCATCAGCCATCCTCACTTCAAT 1454
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1574 TACCAATGCCCACCACCGGTTATGGTCTCACCTCCTCCAATCAGCCATCCTCACTTCAAT 1633
Query 1455 CACACTCATGGCCTTTGAATTATAAGCAACGAATCT 1490
|||||||| |||||||||||| |||||| | |||||
Sbjct 1634 CACACTCACGGCCTTTGAATTTTAAGCATCAAATCT 1669
> AT1G77690.1 | Symbols: LAX3 | like AUX1 3 | chr1:29200941-29203340
REVERSE LENGTH=1727
Length=1727
Score = 793 bits (429), Expect = 0.0
Identities = 1068/1364 (78%), Gaps = 93/1364 (7%)
Strand=Plus/Plus
Query 90 AAAGCTTCAGACATCAAATCTAAGCTCTCTGACATGT-TT-TGGCATGGTGGCTCTGCT- 146
||| ||||| || | ||| | || |||||| | || | || ||||||||||| |||| |
Sbjct 108 AAATCTTCA-AC-T-AAAACAAAACTCTCT-A-ATTTCTTCTGGCATGGTGGTTCTG-TC 161
Query 147 TATGATGCTTGGTTCAGCTGTGCTTCCAATCAGGTGGCACAAGTGCTGTTGACACTGCCA 206
|| ||||||||||| || |||||||| ||||||||||||||||| ||||||||| | |||
Sbjct 162 TACGATGCTTGGTTTAGTTGTGCTTCAAATCAGGTGGCACAAGTTCTGTTGACATTACCA 221
Query 207 TACTCGTTCTCACAGCTGGGGATGCTCTCAGGG-ATTCTGTTTCAGCTCTTCTATGGCA- 264
|||||||||||||| || |||||| | || ||| ||| ||||||| ||||| ||||| |
Sbjct 222 TACTCGTTCTCACAACTTGGGATGATGTC-GGGAATTTTGTTTCAACTCTTTTATGG-AT 279
Query 265 TCTTAGGTAGTTGGACTGCTTACCTCATCAGCATTCTTTATGTTGAATA-CAGAACTAG- 322
| | || |||||||||||||| ||||| || ||||||| |||||||| | ||||| |
Sbjct 280 TAATGGGAAGTTGGACTGCTTATCTCATTAGTGTTCTTTACGTTGAATATC-GAACTCGT 338
Query 323 AAAGGAGA-GAGAGAAAGTT-AACTTCAGAAACCATGTCATTCAGTGGTTTGAGGTTCTT 380
||| || | |||| ||| || | ||| | ||||| || |||||||||||||||| | ||
Sbjct 339 AAA-GA-ACGAGA-AAAATTCGATTTCCGTAACCACGTTATTCAGTGGTTTGAGG-TGTT 394
Query 381 -GATGGATTGCTT-GGGAAGCATTGGAGGAATGTTGG-TTTAGCTTTTAACTGCACATTC 437
||||||||| || ||||| ||||||||||| |||| || | | ||||||||||| ||
Sbjct 395 AGATGGATTG-TTGGGGAAACATTGGAGGAACCTTGGATTGATC-TTTAACTGCACTTTT 452
Query 438 CTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGCAACATATATTACATAAAT 497
||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| || |||
Sbjct 453 CTTCTCTTTGGATCTGTTATTCAGCTCATTGCTTGTGCTAGCAATATATATTATATTAAT 512
Query 498 GA-TAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACAGT 556
|| ||| ||||||||||||||||||||||||||||||| || || |||||||| || ||
Sbjct 513 GACAAAT-TGGACAAGAGGACATGGACATACATATTTGGGGCGTGCTGTGCAACAACTGT 571
Query 557 CTTCATTCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTC-TTGATGACCA 615
|| ||||||||||||||||| || || || ||||| || || |||||| | |||||||
Sbjct 572 TTTTATTCCTTCCTTCCACAATTATAGAATTTGGTCATTCCTCGGACTCGCT-ATGACCA 630
Query 616 CTTACACTGCTTGGTACCTCACCATTGCCTCCA-TCCTCCATGGACAGGTAC-AAGGA-G 672
|||||||| ||||||| |||||||||| || || |||| ||||| |||| | |||| |
Sbjct 631 CTTACACTTCTTGGTATCTCACCATTG-CTTCACTCCTTCATGGCCAGG--CTGAGGATG 687
Query 673 TGAAGCATTCAGGACCAAGCA-AGCTGGT-TTTATACTTCACAGGGGCCACAAACATTCT 730
|||| || || || |||| || | |||| || |||||||| || ||||| ||||||||
Sbjct 688 TGAAACACTCTGGTCCAACCACA-ATGGTGCTT-TACTTCACCGGAGCCACCAACATTCT 745
Query 731 TTACACATTCGGTGGACATGCTGTTACTGTAGAGATAATGCATGCTATGTGGAAACCGCA 790
||||| || ||||| || || || || || ||||||||||| |||||||||||||||||
Sbjct 746 CTACACCTTTGGTGGCCACGCCGTCACAGTGGAGATAATGCACGCTATGTGGAAACCGCA 805
Query 791 GAAGTTCAAGTCCATATACCT-CTTTGC-AACACTCTACGTGCTGACGCTAACGCTGCCT 848
||||||||| | ||||| || | | || | || | || || || ||||||||||| ||
Sbjct 806 AAAGTTCAAGGCGATATATCTAC-TAGCGACCA-TATATGTACTAACGCTAACGCTACCA 863
Query 849 TCTGCGTCTGCGGTTTATTGGGCGTTTGGTGATTTGCTTCTAAAC-CATTCAAACGCATT 907
|| |||||||||||||||||||||||||| ||| ||| |||| | ||||| || || |
Sbjct 864 TCCGCGTCTGCGGTTTATTGGGCGTTTGGCGATAAGCTACTAA-CTCATTCCAATGCGCT 922
Query 908 -TGCTCTTCTCCCAAAGAATC-TTT-ACCG-TGACTTTGCAGTTG-TGCTTATGCTCATC 962
| |||||||||| |||| | ||| | | | || ||||| | | || ||||||||
Sbjct 923 CT-CTCTTCTCCCTAAGACTGGTTTTAGAGAT-ACC--GCAGT-GATCCTCATGCTCATT 977
Query 963 CATCAGTTCATTACCTTTGGTTTTGCTTGC-ACGCCACTCTACTTTGTGTTGGAGAAGCT 1021
||||| || || || || || || || | | || || | || ||||||| |||||| |
Sbjct 978 CATCAATTTATAACGTTCGGATTCGCGT-CTACACCGTTATATTTTGTGTGGGAGAAA-T 1035
Query 1022 T-ATAGG-GATGCATGAGTGCCGAAG--CATGTGT-AAACGAGC--TGCCGCGAGGCTT- 1073
| ||||| | |||||||| | |||| ||||| | ||| |||| || || || ||
Sbjct 1036 TGATAGGTG-TGCATGAGA-C-GAAGAGCATGT-TCAAAAGAGCCATG--GCTAGA-TTA 1088
Query 1074 CCTGTTGTTATACCCATTTGGTTTCTT-GCTATCATATTTCC-TTTCTTCGGTCCCATTA 1131
|| || ||| ||||||| ||||| ||| || || || || || ||| ||||| || || |
Sbjct 1089 CCCGTGGTTGTACCCATATGGTT-CTTAGCCATTATCTTCCCCTTT-TTCGGACCAATCA 1146
Query 1132 ACTCAACTGTTGGATCTCTACTC-GTCAGCTTCACTGTCTACATCATCCCTGCACTAGCT 1190
| || | || |||||||| || || ||||||||||||||||||||||| ||| | |||
Sbjct 1147 ATTCCGCGGTCGGATCTCT-CTTAGTTAGCTTCACTGTCTACATCATCCCCGCATTGGCT 1205
Query 1191 CATAT-CTTCACCTTCCGCTCCTCCGCCG-CACGTGAAAATGCCGTGGAGCAGCCC-CCG 1247
||||| ||| ||||| |||||| | || || | || ||||| |||||| || || |||
Sbjct 1206 CATATGCTT-ACCTTT-GCTCCTGCTCCTTCAAGAGAGAATGCGGTGGAG-AGGCCACCG 1262
Query 1248 AG-GTTTCTAGGACGG-TGGACTGGGG-CTTTCACCATCAACGCCTTCATAGTTGTGTGG 1304
|| || ||||| || |||| ||||| ||| | ||| ||| || | || || |||
Sbjct 1263 AGAGTGG-TAGGA-GGATGGA-TGGGGACTTACTGCATAAACATATTTGTGGTGGTTTGG 1319
Query 1305 GTGTTCATTGTTGGATTCGGGTTCGGTGGTTGGGCTAGTATGATCAATTTTGTTCACCAA 1364
|| ||| | ||||| |||||||| || || ||||| |||||| |||| ||||||| |||
Sbjct 1320 GTATTCGTAGTTGGGTTCGGGTTTGGAGGATGGGCAAGTATGGTCAACTTTGTTCGCCAG 1379
Query 1365 ATTGACACCTTTGGCCTCTTCACCAAATGCTACCAATGCCCTCC 1408
|| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1380 ATCGACACTTTTGGTCTCTTTACCAAATGCTACCAATGCCCTCC 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5