BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932031
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2981 0.0
> AT2G21090.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:9045516-9047579 REVERSE LENGTH=2064
Length=2064
Score = 2981 bits (1614), Expect = 0.0
Identities = 1770/1845 (96%), Gaps = 11/1845 (1%)
Strand=Plus/Plus
Query 1 CCATGGTGGTTTCTCCCTCCAATGCCCATCAGTAACCCTAGGAAACGGCCAATCTGTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CCATGGTGGTTTCTCCCTCCAATGCCCATCAGTAACCCTAGGAAACGGCCAATCTGTGTC 130
Query 61 GCCCGATCGTTTCTCAGCAGACACGCAACCAAAGCAGAGCTCTCTCAGGCCGTATCTCGT 120
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 131 GCCCAATCGTTTCTCAGCAAACACGCAACGAAAGCAGAGCTCTCTCAGGCCGTATCTCGT 190
Query 121 CTCGAGTCCTTGACTCAACAAGGGATTCGATTACCCTTTGACCTCCTAGCTTCGCTGCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 191 CTCGAGTCCTTGACTCAACAAGGGATTCGATTACCCTTTGACCTCCTAGCATCTCTGCTC 250
Query 181 CAACAGTGTGGAGATACCAAGTCTTTGAAACAAGGCAAATGGATTCATCGTCACTTGAAG 240
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CAGCAGTGTGGAGATACAAAGTCTTTGAAACAAGGCAAATGGATTCATCGTCACTTGAAG 310
Query 241 ATTACTGGATTCAAGAGACCCAACACGCTTTTGTCCAATCATTTAATCGGAATGTACATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATTACTGGATTCAAGAGACCCAACACGCTTTTGTCCAATCATTTAATCGGAATGTACATG 370
Query 301 AAATGTGGTAAACCTATTGATGCGTGTAAAGTGTTTGATCAAATGCATCTCAGGAACTTG 360
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 371 AAATGCGGTAAACCTATTGATGCTTGTAAAGTGTTTGATCAAATGCATCTCAGGAACTTG 430
Query 361 TATTCTTGGAACAATATGGTCTCTGGTTTTGTCAAATCCGGGATGTTGGTGCGTGCACGA 420
||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 431 TATTCGTGGAACAATATGGTCTCTGGGTATGTCAAATCAGGGATGTTGGTGCGTGCACGC 490
Query 421 GTTGTGTTCGATAGTATGCCTGAGAGAGATGTTGTGTCTTGGAACACCATGGTTATTGGG 480
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 491 GTAGTGTTCGATAGTATGCCTGAGAGAGATGTTGTTTCTTGGAACACGATGGTTATTGGG 550
Query 481 TATGCTCAGGATGGGAATCTACACGAGGCGTTGTGGTTTTTTAAAGAGTTGAGGAGATCT 540
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 551 TATGCTCAGGATGGGAATCTACACGAGGCGTTGTGGTTTTATAAAGAGTTTAGGAGATCT 610
Query 541 GGAATCAAGTTTAACGAGTTCAGCTTCGCCGGGCTTTTGACGGCATGTGTGAAATCTAGG 600
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 611 GGAATCAAGTTCAACGAGTTCAGCTTCGCTGGGCTTTTGACGGCATGTGTGAAATCTAGG 670
Query 601 CAGCTCCAGCTCAATCATCAAGCTCACGGGCAGGTTTTGGTTGCTGGGTTTTTGTCAAAT 660
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CAGCTCCAGCTCAATCGGCAAGCTCACGGGCAGGTTTTGGTTGCTGGGTTTTTGTCAAAT 730
Query 661 GTGGTGCTTTCGTGTTCTATCATCGATGCTTATGCGAAATGTGGTCAGATGGAGAGTGCT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GTGGTACTTTCGTGTTCTATCATCGATGCTTATGCGAAATGTGGTCAGATGGAGAGTGCT 790
Query 721 AAAAGATGTTTTGATGAGATGACAGTGAAGGATATTCATATTTGGACTACTCTGATCTCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAAAGATGTTTTGATGAGATGACAGTGAAGGATATTCATATTTGGACTACTCTGATCTCT 850
Query 781 GGGTATGCCAAACTTGGAGATATGGAAGCGGCTGACAAGTTATT-TCGTGAGATGCCGGA 839
|||||||||||||| |||||||||||||| ||||| |||||||| | |||||||||| ||
Sbjct 851 GGGTATGCCAAACTGGGAGATATGGAAGCTGCTGAAAAGTTATTCT-GTGAGATGCCTGA 909
Query 840 GAAAAATCCAGTCTCTTGGACCGCATTAATTGCTGGATATGTTAGACAAGGCTCAGGGGA 899
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 910 GAAAAATCCAGTCTCTTGGACTGCATTAATTGCTGGATATGTTAGACAAGGCTCAGGGAA 969
Query 900 TCAAGCGCTTGACTTGTTTAGAAAAATGATTGCTATGAGGGTTAAACCAGAGCAGTTTAC 959
|| ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 970 TCGAGCGCTTGACTTGTTTAGAAAAATGATTGCTTTGGGGGTTAAACCAGAGCAATTTAC 1029
Query 960 TTTCAGTAGCTGTCTATGTGCCTCTGCGAGCATTGCTTCTCTTAGACATGGGAAGCAAAT 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1030 TTTTAGTAGCTGTCTATGTGCCTCTGCGAGCATTGCTTCTCTTAGACATGGGAAGGAAAT 1089
Query 1020 TCATGGCTACATGATCCGTACCAATGTTAGACCGAATGCGATTGTCACCAGTTCTTTGAT 1079
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1090 TCATGGCTATATGATCCGTACCAATGTTAGACCGAACGCGATTGTCATCAGTTCTTTGAT 1149
Query 1080 AGATATGTACTCCAAATCAGGTAGTTTAGAAGCTAGCGAGCGGGTGTTCAGAATTTGCTA 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1150 AGATATGTACTCCAAATCAGGTAGTTTAGAAGCTAGCGAGCGGGTGTTCAGAATTTGCGA 1209
Query 1140 TGACAAGCAAGACTGCGTTTTGTGGAACACGATGATTTCTGCATTGGCACAGCACGGGCT 1199
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TGACAAGCACGACTGCGTTTTTTGGAACACGATGATTTCTGCATTGGCACAGCACGGGCT 1269
Query 1200 TGGCCACAAGGCCTTGCAGA-TGCTTGATGACATGATCAAATTCAGAGTCCATCCAAACC 1258
||| ||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||
Sbjct 1270 TGGACACAAGGCCTTGC-GAATGCTTGATGACATGATCAAATTCAGGGTCCAGCCAAACC 1328
Query 1259 GAACGACTCTGGTTGTGATTCTTAATGCCTGCAGTCATTCAGGTCTAGTAGAGGAAGGAG 1318
| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1329 GGACGACTCTGGTTGTGATTCTTAATGCCTGCAGCCATTCAGGTCTGGTAGAGGAAGGAT 1388
Query 1319 TGAGGTGGTTTGAGTCAATGACTGTTCAGCACGGGATTGTTCCCGACCAAGAGCATTACG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TGAGGTGGTTTGAGTCAATGACTGTTCAGCACGGGATTGTTCCCGACCAAGAGCATTACG 1448
Query 1379 CATGTCTGATAGATCTCCTAGGTCGCGCCGGTTGTTTCAAAGAACTGATGAGCAAGATCG 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1449 CATGTCTGATAGATCTCCTAGGTCGCGCCGGTTGTTTCAAAGAACTGATGAGGAAGATTG 1508
Query 1439 AGGAAATGCCTTTCGAACCCGACAAGCATATCTGGAACGCAATCTTAGGAGTATCCAGAA 1498
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1509 AGGAAATGCCTTTTGAACCCGACAAGCATATCTGGAACGCAATCCTAGGAGTATGCAGAA 1568
Query 1499 TCCATGGAAACGAAGAACTGGGAAAGAAAGCAGCGGAAGAGCTGATCAAACTGGACCCTG 1558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1569 TCCATGGAAACGAAGAACTGGGAAAGAAAGCAGCGGACGAGCTGATCAAACTGGACCCTG 1628
Query 1559 AGTCGTCTGCGCCATACATATTGCTGTCAAGCATTTACGCAGATCATGGGAAGTGGGAAT 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGTCGTCTGCACCATACATATTGCTGTCAAGCATTTACGCAGATCATGGGAAGTGGGAAT 1688
Query 1619 TAGTAGAGAAGCTGAGAGGGATTATGAAGAAGAGAAGAGTGAACAAAGAAAAAGCTGTTA 1678
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 1689 TAGTAGAGAAGCTGAGAGGGGTTATGAAGAAGAGAAGAGTGAATAAAGAAAAAGCTGTGA 1748
Query 1679 GTTGGATTGAAATCGAGAACAAAGTCGAAGCTTTCACTGTCTCAGACGGGTCGCATGCTC 1738
||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |
Sbjct 1749 GTTGGATTGAAATCGAGAAAAAAGTCGAAGCTTTCACTGTCTCAGATGGGTC--A--C-- 1802
Query 1739 ATGCTCATGCTCGGAAAGAAGAGATCTACTTCATTCTGCATAATCTGGCTGCACTTATGG 1798
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 1803 ATGCTCATGCTCGGAAAGAAGAGATATACTTCATTCTGCATAATCTGGCTGCAGTTATTG 1862
Query 1799 AAGAAGAAGCTTCAAGAACATGATCTCTCATACAAGAA-AAGCAT 1842
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1863 AAGAAGAAGCTTCAAGAACATGATCTCTCATACAAGAAGAAGCAT 1907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5