BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932036
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21140.1 | Symbols: ATPRP2, PRP2 | proline-rich protein 2 | ... 1310 0.0
> AT2G21140.1 | Symbols: ATPRP2, PRP2 | proline-rich protein 2
| chr2:9060625-9062091 REVERSE LENGTH=1265
Length=1265
Score = 1310 bits (709), Expect = 0.0
Identities = 933/1036 (90%), Gaps = 36/1036 (3%)
Strand=Plus/Plus
Query 7 AAC-AAGAGAATCTGATGAGGATATTACCAAAAAGCGGCGGAAGTGC-CTTTGGCCTCCT 64
||| ||| |||||| |||||||||||||| |||||||| ||| |||| |||| |||||||
Sbjct 42 AACAAAGTGAATCTCATGAGGATATTACCGAAAAGCGGAGGAGGTGCTCTTT-GCCTCCT 100
Query 65 CTTTGTGTTTGCTCTCTGCTCGGTGGCTCATTCCCTTAGCCGTGACGTCAAGGTCGTTGG 124
||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 101 CTTTGTGTTTGCTCTTTGTTCGGTGGCTCATTCCCTTAGCTGTGACGTCAAGGTTGTTGG 160
Query 125 GGATATCGAGGTCGTTGGCTACTCAGACATCAGCAAAATCAAGATCCCCAATGCATTCTC 184
||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 161 CGATGTCGAAGTCATTGGCTACTCAGAAATCAGCAAAATCAAGATCCCCAATGCATTCTC 220
Query 185 AGGACTCCGAGTAACGATAGAATGCAAGGCGGCCGATTCAAAAGGCCATTTTGTTACAAG 244
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 221 AGGACTTCGAGTTACGATAGAATGCAAGGCGGCCGATTCAAAAGGCCATTTTGTAACGAG 280
Query 245 AGGAAGCGGAGAAGTTGACGAAACAGGAAAGTTTCATCTCAATATTCCTCATGATATTGT 304
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 281 GGGAAGCGGAGAAGTGGACGAAACAGGAAAGTTTCATCTTAATATTCCTCATGACATTGT 340
Query 305 CGGTGACGACGGAACTCTGAAAGAAGCCTGCTATGCTCAACTTCAAAGTGCCTCCGGCAA 364
|||||| ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||
Sbjct 341 CGGTGATGACGGAACTCTAAAAGAAGCTTGCTATGCTCATCTTCAAAGTGCCTTCGGCAA 400
Query 365 CCCTTGTCCGGCCCACGACGGCCTCGAGGCCTCAAAGATCGTGTTTCTATCGAAATCCGG 424
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 401 CCCTTGTCCGGCCCACGATGGCCTTGAGGCCTCCAAGATCGTGTTTCTATCGAAATCCGG 460
Query 425 CGAAAACCAAGTTTTGGGTCTCAAACAAAGTCTTAAATTCTCACCGGAAGTTTGCATCTC 484
| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 461 CCAAAACCACGTTTTGGGTCTCAAAAAAAGTCTTAAATTCTCACCAGAAGTTTGCATCTC 520
Query 485 AAAGTTCTTTTGGCATATGCCTAAGTTCCCTTTACCTCCACCACTTAATCTCCCGCCATT 544
||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 521 AAAGTTCTTTTGGCATATGCCTAAGTTCCCTTTACCTCCTCCGCTTAATCTCCCACCGTT 580
Query 545 AACGTTTCCTAAGATCAAGAAACCTTGTCCCCCAATTTACAAACCACCGGTGGTGATCCC 604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 AACGTTTCCTAAGATCAAGAAGCCTTGTCCCCCAATTTACAAACCACCGGTGGTGATCCC 640
Query 605 CAAGAAGCCGTGTCCACCAAAGATTGCACATAAGCCCATCTACAAGCCTCCAGTGCCTAT 664
|||||||||||||||||||||||||||||||| |||||||||||||| || || || ||
Sbjct 641 TAAGAAGCCGTGTCCACCAAAGATTGCACATAAACCCATCTACAAGCCGCCGGTTCCCAT 700
Query 665 CTACAAGCCGCCGGTGCCTATCTACAAGCCACCAGTGGTGATCCCCAAGAAACCATGTCC 724
||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 701 CTACAAGCCTCCAGTGCCTATCTACAAGCCACCAGTGGTTATCCCCAAGAAACCGTGTCC 760
Query 725 ACCAAAGATACACAAGCCCATCTACAAGCCACATGTGCCTATCTACAAGCCCATCTACAA 784
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 761 ACCAAAGATACACAAGCCCATCTACAAGCCACCCGTGCCTATCTACAAGCC--TC--CA- 815
Query 785 GCCTCCAGTGGTGATCCCAAATAAGCCATGTCCACCACTTCACAAGCCGATCTACAAGCC 844
| | | | |||||||||| ||| ||| ||| |||||||||||||||||||||||||
Sbjct 816 G--T---G-G-TGATCCCAAAGAAGACATTTCCTCCACTTCACAAGCCGATCTACAAGCA 868
Query 845 CCCGGTGCCTATCTACAAGCCGCCGGTACCTATTTACAAACCGATCATCAAGCCGCCGGT 904
|||||| ||||||||||| || | || | | |||||||||| ||
Sbjct 869 CCCGGTTCCTATCTACAAACC------A---AT---C-------T--TCAAGCCGCCAGT 907
Query 905 GGTGGTGATTCCAAAGAAGCCATGTCCACCACTTCCCAAGTTTCCACATTTCCCACCAAA 964
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 908 GGTGGTGATTCCAAAGAAACCATGTCCACCACTTCCCAAGTTTCCACACTTCCCACCTAA 967
Query 965 ATACATTCCACACCCTAAGTTCGGAAAATGGCCTCCTTTCCCTTCTCATCCTTGATGGAG 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 968 ATACATTCCACACCCTAAGTTCGGAAAATGGCCTCCTTTCCCTTCTCATCCTTGATAAAG 1027
Query 1025 ATACATAATCATCTGT 1040
|| || |||| |||||
Sbjct 1028 ATGCAAAATCCTCTGT 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5