BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg932039
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21170.1 | Symbols: TIM, PDTPI | triosephosphate isomerase |... 2030 0.0
> AT2G21170.1 | Symbols: TIM, PDTPI | triosephosphate isomerase
| chr2:9070754-9073233 REVERSE LENGTH=1368
Length=1368
Score = 2030 bits (1099), Expect = 0.0
Identities = 1160/1189 (98%), Gaps = 6/1189 (1%)
Strand=Plus/Plus
Query 1 ACCACCAACCCTCCTCATCGCCTCTATCTCCTCTGCTACCTTAAGCTGAGAGAGTCACAG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ACCACCAACCCT-CTCATCGCCTCTATCTCCTCTGCTACCTTAAGCTGAGAGAGTCACAG 68
Query 61 TCTCGTCTCTATCTCTCCTCTTTGCCtttttttCCACTCACTACACGCCAAACCCGACGA 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 69 TCTCGTCTCTATCTCTCCTCTTTGCC--TTTTTCCACTCACTACACGCCAAACCCGACGA 126
Query 121 CATGGCAGCGACCTCTCTCACTGCCCCTCCTCCTTTCTCCGGTCTCCGCCGCATTTCTCC 180
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 127 CATGGCAGCTACCTCTCTCACTGCCCCTCCTTCTTTCTCCGGTCTCCGCCGCATTTCTCC 186
Query 181 CAAGCTCGA--C-GCCGCCGTCTCCTCCCACCAATCCTTCTTCCACCGCGTCAATTCCTC 237
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CAAGCTCGACGCTGCCGCCGTCTCCTCCCACCAATCCTTCTTCCACCGCGTCAATTCCTC 246
Query 238 TACCCGTCTCGTTTCTTCCTCTTCTTCTTCTCATCGCTCTCCCAGAGGCGTTGTTGCCAT 297
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 247 TACCCGTCTCGTTTCTTCCTCTTCTTCTTCTCATCGCTCCCCCAGAGGTGTTGTTGCCAT 306
Query 298 GGCTGGATCCGGAAAGTTTTTCGTTGGAGGAAACTGGAAATGTAACGGGACTAAGGACTC 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 307 GGCTGGATCCGGAAAGTTTTTCGTTGGAGGAAACTGGAAGTGTAACGGGACTAAGGACTC 366
Query 358 CATCGCCAAGCTTGTCTCTGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGATGTTGT 417
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CATCGCCAAGCTTATCTCCGATCTCAACAGTGCAACCTTGGAAGCAGATGTAGATGTTGT 426
Query 418 TGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTTGACAGACCGTATTGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTTGACAGACCGTATTGA 486
Query 478 CATATCAGGTCAGAACTCTTGGGTTGGAAAAGGTGGAGCCTTCACTGGTGAAATCAGCGT 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 487 CATATCAGGTCAGAACTCTTGGGTTGGGAAAGGTGGAGCCTTCACTGGTGAAATCAGCGT 546
Query 538 GGAACAGCTCAAAGACCTTGGCTGCAAGTGGGTCATTCTTGGGCATTCCGAACGGAGACA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GGAACAGCTCAAAGACCTTGGCTGCAAGTGGGTCATTCTTGGGCATTCCGAACGGAGACA 606
Query 598 TGTCATCGGAGAAAAAGATGAGTTTATCGGGAAGAAAGCTGCTTACGCATTGAGTGAGGG 657
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 607 TGTCATCGGAGAAAAAGATGAGTTTATCGGGAAGAAAGCTGCATATGCATTGAGTGAGGG 666
Query 658 TCTTGGAGTGATAGCTTGTATTGGGGAAAAGCTAGAAGAGAGGGAAGCAGGCAGGACATT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 667 TCTTGGAGTGATAGCTTGTATTGGGGAAAAGCTAGAAGAGAGGGAAGCAGGCAAGACGTT 726
Query 718 TGATGTTTGCTTCGCGCAACTGAAGGCGTTTGCTGTTGCTGTGCCTAGCTGGGAAAATAT 777
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 727 TGATGTTTGCTTCGCGCAACTGAAGGCGTTTGCTGATGCTGTGCCTAGCTGGGACAATAT 786
Query 778 AGTTGTTGCATACGAGCCTGTTTGGGCAATTGGAACTGGTAAAGTTGCATCTCCTCAGCA 837
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGTTGTTGCATACGAGCCTGTATGGGCAATTGGAACTGGTAAAGTTGCATCTCCTCAGCA 846
Query 838 AGCACAAGAAGTCCATGTAGCTGTCCGTGGTTGGCTAAAAAAGAATGTCTCTGAGGAAGT 897
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 847 AGCACAAGAAGTCCATGTAGCTGTCCGCGGTTGGCTAAAGAAGAATGTCTCTGAGGAAGT 906
Query 898 CGCTTCCAAAACAAGAATCATATATGGAGGTTCTGTCAATGGAGGCAACAGTGCAGAGCT 957
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TGCTTCCAAAACGAGAATCATATATGGAGGTTCTGTCAATGGAGGCAACAGTGCAGAGCT 966
Query 958 TGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGCGGTGCCTCCTTGAAGGGTCCTGA 1017
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 967 TGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGTGGTGCCTCCTTGAAGGGTCCTGA 1026
Query 1018 GTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGATTGAGAACTAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGATTGAGAACTAT 1086
Query 1078 CAGTAACGGAAATCGCTAGTCTCCATGGAACAGATGAGATCAGAAATAAAAGGGAGGTTA 1137
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1087 CAGTAACGGAAATCGCTAGTCTCCATGGAACAGATGAGATGAGAAATAAAAGGGAGGTTA 1146
Query 1138 GCGACCttgttgttgttgttgtgttCTTACTTCTTCTTCGTGAACTAAT 1186
|||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1147 GCGACCTTGTTGTTGTTGTTGTGTTCTTACATCTTCTTCTTGAACTAAT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5