BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg932040

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21180.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   623    4e-178


> AT2G21180.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G19875.1); 
Has 124 Blast hits to 124 proteins in 12 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9074660-9075380 
REVERSE LENGTH=721
Length=721

 Score =  623 bits (337),  Expect = 4e-178
 Identities = 393/419 (94%), Gaps = 7/419 (2%)
 Strand=Plus/Plus

Query  17   AACTATGGCATATG--GAGAG-AGATCATCGATCTTGGATTCATTCTCGCTCTCGCCACT  73
            ||||||||| ||||  ||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct  26   AACTATGGCTTATGAAGAGAGAAGATCATCGATCCTGGATTCATTCTCGCTATCGCCACT  85

Query  74   ACCATACCCAGTTCTCTTGATCCTAGCCGTTGCTTCAGTGTTCTTGTTGAGTTCATGGTA  133
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86   ACCATACCCAGTTCTTTTGATCCTAGCCGTTGCTTCAGTGTTCTTGTTGAGTTCATGGTA  145

Query  134  CTTCAGCTTGGAAGATGCAGCCGAATCAGCGGGAGAGCAGATAAATTTTGCTCTTCTCTT  193
            ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  146  CTTCAGCTTGGAAGAAGCAGCCGAATCAGCGGAAGAGCAGATAAATTTTGCGCTTCTCTT  205

Query  194  GATTCCTCTGTTTCTTATAGTGTTGGTCCGGTGGTTATCTTCCATGGAGAACCCTGACGC  253
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  206  GATTCCTCTGTTTCTTATAGTCTTGGTCCGGTGGTTATCTTCCATGGAGAACCCTGATGC  265

Query  254  -CATTCTCGGGATGTTTTCGAACC-GACGTCGGACGACTTACGTGAGTCCCGGAGCCGGA  311
             | |||||||||||||||| || | | |||||||| ||||||||||||||||||||||||
Sbjct  266  GC-TTCTCGGGATGTTTTC-AAGCAGTCGTCGGACAACTTACGTGAGTCCCGGAGCCGGA  323

Query  312  GATGACGGTGGAAGCTCGCCGTGGGGGGTGGCGGCTTTAATAGTTTTGTTGCTTGTATTG  371
            | |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct  324  GGTGACGGTGGAAGCTCGCCGTGGGGAGTGGCGGCGTTGATAGTTTTGTTGCTTGTATTG  383

Query  372  CTTCATTATCAATCAAGTTTCTTGGAGATGTGGTTTGGTTAATGATATTGACAGGTTTT  430
            ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  384  CTTCAGTATCAATCAAGTTTCTTGGAGATGTGGTCTGGTTAATGATATTGATAGGTTTT  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5